Factsheet for Bra000376.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83397	Canola	cytosol	100.0	100.0
CDX95634	Canola	cytosol	99.18	99.18
Bra003310.1-P	Field mustard	cytosol	96.72	96.72
AT2G45170.1	Thale cress	cytosol	93.44	93.44
Bra040738.1-P	Field mustard	cytosol	82.79	85.59
Solyc08g007400.2.1	Tomato	cytosol	82.79	84.87
PGSC0003DMT400032488	Potato	cytosol	83.61	83.61
Bra012710.1-P	Field mustard	cytosol	81.15	83.19
PGSC0003DMT400012239	Potato	cytosol	82.79	82.79
KRH77376	Soybean	cytosol	81.15	80.49
Bra038481.1-P	Field mustard	cytosol, mitochondrion	54.1	80.49
VIT_15s0048g00660.t01	Wine grape	cytosol	80.33	79.03
KRH04111	Soybean	cytosol	82.79	78.91
VIT_02s0154g00390.t01	Wine grape	cytosol	83.61	78.46
Bra013172.1-P	Field mustard	cytosol	74.59	76.47
KRH57384	Soybean	cytosol	81.97	74.63
Bra029509.1-P	Field mustard	cytosol	72.95	74.17
Bra013578.1-P	Field mustard	cytosol	72.13	72.13
Bra019407.1-P	Field mustard	cytosol	72.95	71.77
GSMUA_Achr8P11170_001	Banana	cytosol	71.31	70.16
Bra021303.1-P	Field mustard	cytosol	47.54	69.88
KRH28060	Soybean	cytosol	81.97	64.94
GSMUA_Achr11P...	Banana	cytosol	60.66	59.68
Bra027227.1-P	Field mustard	cytosol	50.82	53.91
Solyc08g078820.2.1	Tomato	cytosol, plastid	82.79	51.01
Bra020749.1-P	Field mustard	cytosol	46.72	47.9
Bra001197.1-P	Field mustard	cytosol	46.72	47.9

Protein Annotations

EnsemblPlants:Bra000376.1	EnsemblPlants:Bra000376.1-P	EnsemblPlantsGene:Bra000376	Gene3D:3.10.20.90	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006914	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	InterPro:Atg8-like	InterPro:Ubiquitin-like_domsf	PANTHER:PTHR10969	PANTHER:PTHR10969:SF39	PFAM:PF02991
SUPFAM:SSF54236	UniParc:UPI000253FE38	UniProt:M4C848	MapMan:19.3.3.1	:	:

Description

AT2G45170 (E=1e-062) ATATG8E, ATG8E | AtATG8e; microtubule binding

Coordinates

chrA03:+:10815765..10816600

Molecular Weight (calculated)

13932.7 Da

IEP (calculated)

9.217

GRAVY (calculated)

-0.515

Length

122 amino acids

Sequence
(BLAST)

001: MNKGSSFKLD NDYEKRKAEA GRIREKYPDR IPVIVEKAEK SDIPNIDKKK YLVPSDLTVG QFVYVIRKRI KLSAEKAIFI FVDNVLPPTG EIMSSVYEEK
101: KDQDGFLYIT YSGENTFGAS SI

Best Arabidopsis Sequence Match ( AT2G45170.2 )
(BLAST)

001: MNKGSIFKMD NDFEKRKAEA GRIREKYPDR IPVIVEKAEK SEVPNIDKKK YLVPSDLTVG QFVYVIRKRI KLSAEKAIFI FVDNVLPPTG ELMSSVYEDK
101: KDEDGFLYIT YSGENTFGAS SI

Arabidopsis Description

ATG8EAutophagy-related protein 8e [Source:UniProtKB/Swiss-Prot;Acc:Q8S926]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.