Factsheet for Bra021303.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, vacuole
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24873	Canola	cytosol	95.18	84.04
AT1G62040.1	Thale cress	cytosol	81.93	57.14
Bra013172.1-P	Field mustard	cytosol	77.11	53.78
PGSC0003DMT400042494	Potato	cytosol	78.31	52.85
Solyc02g080590.2.1	Tomato	cytosol	78.31	52.85
Bra040738.1-P	Field mustard	cytosol	74.7	52.54
Os07t0512200-01	Rice	cytosol	74.7	52.1
EER99442	Sorghum	cytosol	74.7	52.1
Bra029509.1-P	Field mustard	cytosol	74.7	51.67
VIT_10s0116g01700.t01	Wine grape	cytosol	75.9	51.64
Bra019407.1-P	Field mustard	cytosol	77.11	51.61
TraesCS2B01G274200.1	Wheat	cytosol	73.49	51.26
TraesCS2A01G224000.1	Wheat	cytosol	73.49	51.26
TraesCS2D01G229900.1	Wheat	cytosol	73.49	51.26
Bra013578.1-P	Field mustard	cytosol	73.49	50.0
Bra012710.1-P	Field mustard	cytosol	71.08	49.58
Bra000376.1-P	Field mustard	cytosol	69.88	47.54
Bra003310.1-P	Field mustard	cytosol	68.67	46.72
Bra038481.1-P	Field mustard	cytosol, mitochondrion	45.78	46.34
HORVU2Hr1G046860.2	Barley	cytosol, plastid	73.49	38.12
Bra027227.1-P	Field mustard	cytosol	48.19	34.78
Bra001197.1-P	Field mustard	cytosol	48.19	33.61
Bra020749.1-P	Field mustard	cytosol	45.78	31.93
Zm00001d006474_P002	Maize	nucleus	71.08	28.23

Protein Annotations

EnsemblPlants:Bra021303.1	EnsemblPlants:Bra021303.1-P	EnsemblPlantsGene:Bra021303	Gene3D:3.10.20.90	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006914	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	InterPro:Atg8-like	InterPro:Ubiquitin-like_domsf	PANTHER:PTHR10969	PANTHER:PTHR10969:SF43	PFAM:PF02991
SUPFAM:SSF54236	UniParc:UPI0002545216	UniProt:M4DXQ7	MapMan:19.3.3.1	:	:

Description

AT1G62040 (E=9e-031) ATG8C | ATG8C (autophagy 8c); microtubule binding

Coordinates

chrA01:+:22665522..22666172

Molecular Weight (calculated)

9681.9 Da

IEP (calculated)

9.820

GRAVY (calculated)

-0.261

Length

83 amino acids

Sequence
(BLAST)

1: MADIYFKSEH PLERRLIEAS RTRDKYPDRV PVIVEKAERS LMYLIPDDLT VGQFVYVVRK RIKLSAEKAI FVFVKNTLPP TGD

Best Arabidopsis Sequence Match ( AT1G62040.2 )
(BLAST)

1: MANSSFKLEH PLERRQIESS RIREKYPDRI PVIVERAERS DVPNIDKKKY LVPADLTVGQ FVYVVRKRIK LSAEKAIFVF VKNTLPPTGK HTTS

Arabidopsis Description

ATG8CAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178W309]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.