CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021303.1-P	Field mustard	cytosol	84.04	95.18
CDY07250	Canola	cytosol	79.79	63.03
AT1G62040.1	Thale cress	cytosol	75.53	59.66
CDX93087	Canola	cytosol	71.28	56.3
CDY50946	Canola	cytosol	71.28	56.3
Solyc02g080590.2.1	Tomato	cytosol	72.34	55.28
PGSC0003DMT400042494	Potato	cytosol	72.34	55.28
Os07t0512200-01	Rice	cytosol	69.15	54.62
EER99442	Sorghum	cytosol	69.15	54.62
CDY68526	Canola	cytosol	68.09	54.24
VIT_10s0116g01700.t01	Wine grape	cytosol	70.21	54.1
TraesCS2B01G274200.1	Wheat	cytosol	68.09	53.78
TraesCS2A01G224000.1	Wheat	cytosol	68.09	53.78
TraesCS2D01G229900.1	Wheat	cytosol	68.09	53.78
CDY40540	Canola	cytosol	67.02	52.94
CDY16657	Canola	cytosol	67.02	52.5
CDX98722	Canola	cytosol	69.15	52.42
CDX94567	Canola	cytosol	65.96	51.67
CDX79116	Canola	cytosol	65.96	50.82
CDX82891	Canola	cytosol	65.96	50.82
CDX82890	Canola	cytosol	65.96	50.0
CDX83397	Canola	cytosol	63.83	49.18
CDX95634	Canola	cytosol	62.77	48.36
CDY56249	Canola	cytosol	62.77	48.36
CDX94071	Canola	cytosol	69.15	47.45
CDY32262	Canola	cytosol	60.64	46.72
CDY37030	Canola	cytosol	39.36	44.05
HORVU2Hr1G046860.2	Barley	cytosol, plastid	68.09	40.0
CDY31453	Canola	cytosol	56.38	39.26
CDX97685	Canola	cytosol	43.62	35.65
CDY30087	Canola	cytosol	43.62	35.65
CDX90515	Canola	plastid	65.96	33.88
CDY09685	Canola	plastid	65.96	33.51
CDX74104	Canola	cytosol	41.49	32.77
CDY08051	Canola	cytosol	40.43	31.93
CDY24693	Canola	cytosol	39.36	31.09
CDY05263	Canola	cytosol	39.36	31.09
Zm00001d006474_P002	Maize	nucleus	65.96	29.67
CDY50852	Canola	cytosol	68.09	22.38

Protein Annotations

MapMan:19.3.3.1	Gene3D:3.10.20.90	GO:A0A078GJT7	UniProt:A0A078GJT7	InterPro:Atg8-like	EnsemblPlants:CDY24873
ProteinID:CDY24873	ProteinID:CDY24873.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006914	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00028615001
PFAM:PF02991	PANTHER:PTHR10969	PANTHER:PTHR10969:SF43	SUPFAM:SSF54236	UniParc:UPI0004EE598A	InterPro:Ubiquitin-like_domsf

Description

BnaA03g59770DAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJT7]

Coordinates

chrLK032165:+:161337..161987

Molecular Weight (calculated)

11033.6 Da

IEP (calculated)

10.037

GRAVY (calculated)

-0.323

Length

94 amino acids

Sequence
(BLAST)

1: MADIYFKSEH PLERRQIEAS RTRDKYPDRC MLQVIVEKAE RSLMFPISTR KIQYLVPDDL TVGQFVYVVR KRIKLSAEKA IFVFVKNTLP PTGD

Best Arabidopsis Sequence Match ( AT1G62040.2 )
(BLAST)

1: MANSSFKLEH PLERRQIESS RIREKYPDRI PVIVERAERS DVPNIDKKKY LVPADLTVGQ FVYVVRKRIK LSAEKAIFVF VKNTLPPTGK HTTS

Arabidopsis Description

ATG8CAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178W309]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.