Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G62040.1 | Thale cress | cytosol | 90.76 | 90.76 |
| CDY50946 | Canola | cytosol | 82.35 | 82.35 |
| CDX93087 | Canola | cytosol | 81.51 | 81.51 |
| PGSC0003DMT400042494 | Potato | cytosol | 84.03 | 81.3 |
| Solyc02g080590.2.1 | Tomato | cytosol | 84.03 | 81.3 |
| Os07t0512200-01 | Rice | cytosol | 80.67 | 80.67 |
| EER99442 | Sorghum | cytosol | 79.83 | 79.83 |
| CDY24873 | Canola | cytosol | 63.03 | 79.79 |
| VIT_10s0116g01700.t01 | Wine grape | cytosol | 81.51 | 79.51 |
| CDY16657 | Canola | cytosol | 79.83 | 79.17 |
| TraesCS2D01G229900.1 | Wheat | cytosol | 78.99 | 78.99 |
| TraesCS2B01G274200.1 | Wheat | cytosol | 78.99 | 78.99 |
| TraesCS2A01G224000.1 | Wheat | cytosol | 78.99 | 78.99 |
| CDX98722 | Canola | cytosol | 81.51 | 78.23 |
| CDX94567 | Canola | cytosol | 78.15 | 77.5 |
| CDX82891 | Canola | cytosol | 78.99 | 77.05 |
| CDX79116 | Canola | cytosol | 78.99 | 77.05 |
| CDY68526 | Canola | cytosol | 75.63 | 76.27 |
| CDX82890 | Canola | cytosol | 78.99 | 75.81 |
| CDY40540 | Canola | cytosol | 74.79 | 74.79 |
| CDX94071 | Canola | cytosol | 81.51 | 70.8 |
| CDX83397 | Canola | cytosol | 71.43 | 69.67 |
| CDX95634 | Canola | cytosol | 70.59 | 68.85 |
| CDY56249 | Canola | cytosol | 69.75 | 68.03 |
| CDY32262 | Canola | cytosol | 68.07 | 66.39 |
| HORVU2Hr1G046860.2 | Barley | cytosol, plastid | 78.99 | 58.75 |
| CDY30087 | Canola | cytosol | 55.46 | 57.39 |
| CDX97685 | Canola | cytosol | 55.46 | 57.39 |
| CDY31453 | Canola | cytosol | 62.18 | 54.81 |
| CDY37030 | Canola | cytosol | 38.66 | 54.76 |
| CDX74104 | Canola | cytosol | 54.62 | 54.62 |
| CDY08051 | Canola | cytosol | 53.78 | 53.78 |
| CDY24693 | Canola | cytosol | 50.42 | 50.42 |
| CDY05263 | Canola | cytosol | 50.42 | 50.42 |
| CDX90515 | Canola | plastid | 73.95 | 48.09 |
| CDY09685 | Canola | plastid | 73.95 | 47.57 |
| Zm00001d006474_P002 | Maize | nucleus | 77.31 | 44.02 |
| CDY50852 | Canola | cytosol | 75.63 | 31.47 |
Protein Annotations
| EnsemblPlants:CDY07250 | EnsemblPlantsGene:GSBRNA2T00124048001 | Gene3D:3.10.20.90 | GO:A0A078EYS8 | InterPro:Atg8-like | InterPro:Ubiquitin-like_domsf |
| PANTHER:PTHR10969 | PANTHER:PTHR10969:SF43 | PFAM:PF02991 | ProteinID:CDY07250 | ProteinID:CDY07250.1 | SUPFAM:SSF54236 |
| UniParc:UPI0004EE8FCB | MapMan:19.3.3.1 | : | : | : | : |
Description
BnaC04g19210D
Coordinates
chrLK031976:-:126024..127311
Molecular Weight (calculated)
13587.4 Da
IEP (calculated)
8.871
GRAVY (calculated)
-0.334
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MADISFKSEH PLERRQIEAS RIRDKYPDRV PVIVEKAERS DVPNIDKKKF LVPADLTVGQ FVYVVRKRIK LSAEKAIFVF VKNTLPQTAA MMSAVSDENK
101: DEDGFLYMTY SGENTFGLV
101: DEDGFLYMTY SGENTFGLV
001: MANSSFKLEH PLERRQIESS RIREKYPDRI PVIVERAERS DVPNIDKKKY LVPADLTVGQ FVYVVRKRIK LSAEKAIFVF VKNTLPPTAA MMSAIYDENK
101: DEDGFLYMTY SGENTFGLV
101: DEDGFLYMTY SGENTFGLV
Arabidopsis Description
ATG8CAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178W309]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.