CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012710.1-P	Field mustard	cytosol	63.93	98.32
CDY40540	Canola	cytosol	62.84	96.64
CDY09685	Canola	plastid	96.17	95.14
CDY68526	Canola	cytosol	61.2	94.92
Solyc08g007400.2.1	Tomato	cytosol	56.83	87.39
PGSC0003DMT400012239	Potato	cytosol	57.92	86.89
PGSC0003DMT400032488	Potato	cytosol	56.83	85.25
KRH77376	Soybean	cytosol	56.83	84.55
CDX83397	Canola	cytosol	55.19	82.79
CDX95634	Canola	cytosol	55.19	82.79
VIT_15s0048g00660.t01	Wine grape	cytosol	55.74	82.26
KRH04111	Soybean	cytosol	57.38	82.03
CDY56249	Canola	cytosol	54.64	81.97
CDY32262	Canola	cytosol	54.64	81.97
VIT_02s0154g00390.t01	Wine grape	cytosol	57.92	81.54
KRH57384	Soybean	cytosol	58.47	79.85
CDX93087	Canola	cytosol	51.91	79.83
CDY50946	Canola	cytosol	51.37	78.99
CDY16657	Canola	cytosol	49.73	75.83
CDX94567	Canola	cytosol	49.18	75.0
CDX98722	Canola	cytosol	50.27	74.19
CDY07250	Canola	cytosol	48.09	73.95
AT4G16520.3	Thale cress	extracellular	48.63	73.55
CDX79116	Canola	cytosol	48.63	72.95
CDX82891	Canola	cytosol	48.63	72.95
CDX82890	Canola	cytosol	47.54	70.16
KRH28060	Soybean	cytosol	57.38	68.18
CDX94071	Canola	cytosol	50.82	67.88
GSMUA_Achr8P11170_001	Banana	cytosol	45.9	67.74
CDY24873	Canola	cytosol	33.88	65.96
CDY37030	Canola	cytosol	30.05	65.48
Solyc08g078820.2.1	Tomato	cytosol, plastid	67.21	62.12
GSMUA_Achr11P...	Banana	cytosol	39.34	58.06
CDY30087	Canola	cytosol	34.97	55.65
CDX97685	Canola	cytosol	34.97	55.65
CDY31453	Canola	cytosol	40.44	54.81
CDY50852	Canola	cytosol	73.22	46.85
CDY24693	Canola	cytosol	30.05	46.22
CDX74104	Canola	cytosol	30.05	46.22
CDY08051	Canola	cytosol	29.51	45.38
CDY05263	Canola	cytosol	29.51	45.38

Protein Annotations

EnsemblPlants:CDX90515	EnsemblPlantsGene:GSBRNA2T00151141001	Gene3D:3.10.20.90	GO:A0A078DN10	InterPro:Atg8-like	InterPro:Ubiquitin-like_domsf
PANTHER:PTHR10969	PANTHER:PTHR10969:SF39	PFAM:PF02991	ProteinID:CDX90515	ProteinID:CDX90515.1	SUPFAM:SSF54236
UniParc:UPI0004EF09BD	MapMan:19.3.3.1	:	:	:	:

Description

BnaA03g42660D

Coordinates

chrLK031863:+:644603..646127

Molecular Weight (calculated)

20667.9 Da

IEP (calculated)

8.634

GRAVY (calculated)

-0.201

Length

183 amino acids

Sequence
(BLAST)

001: MQKRDPVICG ASSLSFFVPS DSHRFSRSKV PRQLRSLDAI MLSLYAISCP ITNIQTFLEV GLEVMAKSTF KEEHDLEKRS AEAARIREKY SDRIPVIVEK
101: AEKSDIPTID KKKYLVPADL TVGQFVYVIR KRIKLSSEKA IFIFVDNVLP PTGALMSAVY EEKKDDDGFL YVTYSGENTF GST

Best Arabidopsis Sequence Match ( AT4G16520.2 )
(BLAST)

001: MAKSSFKQEH DLEKRRAEAA RIREKYPDRI PVIVEKAEKS DIPTIDKKKY LVPADLTVGQ FVYVIRKRIK LSAEKAIFIF VDNVLPPAGA LMSSVYEEKK
101: DDDGFLYVTY SGENTFGFGS P

Arabidopsis Description

ATG8FUbiquitin-like superfamily protein [Source:TAIR;Acc:AT4G16520]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.