CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020749.1-P	Field mustard	cytosol	98.32	98.32
CDY05263	Canola	cytosol	97.48	97.48
AT3G06420.1	Thale cress	cytosol	87.39	87.39
CDY08051	Canola	cytosol	87.39	87.39
CDX74104	Canola	cytosol	86.55	86.55
GSMUA_Achr5P27270_001	Banana	cytosol	67.23	67.23
CDY30087	Canola	cytosol	63.87	66.09
CDX97685	Canola	cytosol	63.87	66.09
Solyc01g068060.2.1	Tomato	cytosol	64.71	64.71
VIT_07s0005g02200.t01	Wine grape	cytosol	67.23	64.52
KRH31741	Soybean	cytosol	64.71	63.11
KRH69161	Soybean	cytosol	64.71	63.11
PGSC0003DMT400013320	Potato	cytosol	63.03	63.03
TraesCS5A01G158000.1	Wheat	plasma membrane	57.98	59.48
HORVU5Hr1G049440.1	Barley	cytosol	57.14	58.62
TraesCS5B01G155700.1	Wheat	cytosol	57.14	58.62
TraesCS5D01G163400.1	Wheat	cytosol	52.94	57.8
CDY16657	Canola	cytosol	52.1	51.67
CDX94567	Canola	cytosol	51.26	50.83
CDY07250	Canola	cytosol	50.42	50.42
CDX98722	Canola	cytosol	52.1	50.0
CDX82891	Canola	cytosol	50.42	49.18
CDX79116	Canola	cytosol	50.42	49.18
OQU75649	Sorghum	cytosol	45.38	48.65
CDX82890	Canola	cytosol	50.42	48.39
CDX93087	Canola	cytosol	47.9	47.9
CDY50946	Canola	cytosol	47.9	47.9
CDY56249	Canola	cytosol	48.74	47.54
CDY68526	Canola	cytosol	47.06	47.46
CDX83397	Canola	cytosol	47.9	46.72
CDY40540	Canola	cytosol	46.22	46.22
CDX95634	Canola	cytosol	47.06	45.9
CDX94071	Canola	cytosol	52.1	45.26
CDY32262	Canola	cytosol	43.7	42.62
CDY24873	Canola	cytosol	31.09	39.36
CDY37030	Canola	cytosol	27.73	39.29
CDY31453	Canola	cytosol	44.54	39.26
CDX90515	Canola	plastid	46.22	30.05
CDY09685	Canola	plastid	46.22	29.73
CDY50852	Canola	cytosol	47.06	19.58

Protein Annotations

MapMan:19.3.3.1	Gene3D:3.10.20.90	GO:A0A078GJB9	UniProt:A0A078GJB9	InterPro:Atg8-like	EnsemblPlants:CDY24693
ProteinID:CDY24693	ProteinID:CDY24693.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006914	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00027077001
PFAM:PF02991	PANTHER:PTHR10969	PANTHER:PTHR10969:SF25	SUPFAM:SSF54236	UniParc:UPI0004EF372A	InterPro:Ubiquitin-like_domsf

Description

BnaA05g30920DAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJB9]

Coordinates

chrLK032162:+:486058..487496

Molecular Weight (calculated)

13713.4 Da

IEP (calculated)

8.439

GRAVY (calculated)

-0.459

Length

119 amino acids

Sequence
(BLAST)

001: MGTVVKSFKD QFSADERLKE SRNITAKYPD RVPVIIEKYS NADLPDMDKN KYLVPRDMTV GHFIHMLSNR LHLDSSKSLF VFVHNTLPQT ASCMNSLYNT
101: FKEGDGFLYM TYSTEKTFG

Best Arabidopsis Sequence Match ( AT3G06420.1 )
(BLAST)

001: MGIVVKSFKD QFSSDERLKE SNNIIAKYPD RIPVIIEKYS NADLPDMEKN KYLVPRDMTV GHFIHMLSKR MQLDPSKALF VFVHNTLPQT ASRMDSLYNT
101: FKEEDGFLYM CYSTEKTFG

Arabidopsis Description

ATG8HAutophagy-related protein 8h [Source:UniProtKB/Swiss-Prot;Acc:Q8S925]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.