Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05263 | Canola | cytosol | 99.16 | 99.16 |
| CDY24693 | Canola | cytosol | 98.32 | 98.32 |
| AT3G06420.1 | Thale cress | cytosol | 89.08 | 89.08 |
| Bra001197.1-P | Field mustard | cytosol | 88.24 | 88.24 |
| GSMUA_Achr5P27270_001 | Banana | cytosol | 68.91 | 68.91 |
| Bra027227.1-P | Field mustard | cytosol | 65.55 | 67.83 |
| VIT_07s0005g02200.t01 | Wine grape | cytosol | 68.91 | 66.13 |
| Solyc01g068060.2.1 | Tomato | cytosol | 65.55 | 65.55 |
| KRH31741 | Soybean | cytosol | 66.39 | 64.75 |
| KRH69161 | Soybean | cytosol | 66.39 | 64.75 |
| PGSC0003DMT400013320 | Potato | cytosol | 63.87 | 63.87 |
| TraesCS5A01G158000.1 | Wheat | plasma membrane | 58.82 | 60.34 |
| TraesCS5B01G155700.1 | Wheat | cytosol | 57.98 | 59.48 |
| HORVU5Hr1G049440.1 | Barley | cytosol | 57.98 | 59.48 |
| TraesCS5D01G163400.1 | Wheat | cytosol | 53.78 | 58.72 |
| Bra029509.1-P | Field mustard | cytosol | 52.1 | 51.67 |
| Bra019407.1-P | Field mustard | cytosol | 52.1 | 50.0 |
| OQU75649 | Sorghum | cytosol | 46.22 | 49.55 |
| Bra013578.1-P | Field mustard | cytosol | 50.42 | 49.18 |
| Bra013172.1-P | Field mustard | cytosol | 48.74 | 48.74 |
| Bra003310.1-P | Field mustard | cytosol | 48.74 | 47.54 |
| Bra040738.1-P | Field mustard | cytosol | 47.06 | 47.46 |
| Bra000376.1-P | Field mustard | cytosol | 47.9 | 46.72 |
| Bra021303.1-P | Field mustard | cytosol | 31.93 | 45.78 |
| Bra012710.1-P | Field mustard | cytosol | 45.38 | 45.38 |
| Bra038481.1-P | Field mustard | cytosol, mitochondrion | 30.25 | 43.9 |
Protein Annotations
| EnsemblPlants:Bra020749.1 | EnsemblPlants:Bra020749.1-P | EnsemblPlantsGene:Bra020749 | Gene3D:3.10.20.90 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006914 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | InterPro:Atg8-like | InterPro:Ubiquitin-like_domsf | PANTHER:PTHR10969 | PANTHER:PTHR10969:SF25 | PFAM:PF02991 |
| SUPFAM:SSF54236 | UniParc:UPI0002545F6A | UniProt:M4DW55 | MapMan:19.3.3.1 | : | : |
Description
AT3G06420 (E=2e-058) ATG8H | ATG8H (autophagy 8h); microtubule binding
Coordinates
chrA02:-:23304159..23305303
Molecular Weight (calculated)
13724.4 Da
IEP (calculated)
7.663
GRAVY (calculated)
-0.466
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTVVKSFKD QFSADERLKE SRNITAKYPD RVPVIIEKYS NADLPDMDKN KYLVPRDMTV GHFIHMLSNR LHLDPSKSLF VFVHNTLPQT ASCMDSLYNT
101: FKEGDGFLYM TYSTEKTFG
101: FKEGDGFLYM TYSTEKTFG
001: MGIVVKSFKD QFSSDERLKE SNNIIAKYPD RIPVIIEKYS NADLPDMEKN KYLVPRDMTV GHFIHMLSKR MQLDPSKALF VFVHNTLPQT ASRMDSLYNT
101: FKEEDGFLYM CYSTEKTFG
101: FKEEDGFLYM CYSTEKTFG
Arabidopsis Description
ATG8HAutophagy-related protein 8h [Source:UniProtKB/Swiss-Prot;Acc:Q8S925]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.