Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G060490.5 | |
| HORVU6Hr1G050500.2 | |
| HORVU6Hr1G050520.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15580.1 | HORVU1Hr1G060490.5 | AT5G05410.1 | 18552202 |
| AT3G15580.1 | HORVU6Hr1G050500.2 | AT5G05410.1 | 18552202 |
| AT3G15580.1 | HORVU6Hr1G050520.2 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G155700.1 | Wheat | cytosol | 96.55 | 96.55 |
| TraesCS5A01G158000.1 | Wheat | plasma membrane | 96.55 | 96.55 |
| TraesCS5D01G163400.1 | Wheat | cytosol | 87.93 | 93.58 |
| GSMUA_Achr5P27270_001 | Banana | cytosol | 75.0 | 73.11 |
| AT3G15580.1 | Thale cress | cytosol | 69.83 | 70.43 |
| CDY30087 | Canola | cytosol | 69.83 | 70.43 |
| Bra027227.1-P | Field mustard | cytosol | 69.83 | 70.43 |
| CDX97685 | Canola | cytosol | 69.83 | 70.43 |
| OQU75649 | Sorghum | cytosol | 63.79 | 66.67 |
| Solyc01g068060.2.1 | Tomato | cytosol | 68.1 | 66.39 |
| PGSC0003DMT400013320 | Potato | cytosol | 67.24 | 65.55 |
| VIT_07s0005g02200.t01 | Wine grape | cytosol | 69.83 | 65.32 |
| KRH69161 | Soybean | cytosol | 66.38 | 63.11 |
| KRH31741 | Soybean | cytosol | 65.52 | 62.3 |
| AT3G06420.1 | Thale cress | cytosol | 62.07 | 60.5 |
| CDX74104 | Canola | cytosol | 61.21 | 59.66 |
| Bra001197.1-P | Field mustard | cytosol | 61.21 | 59.66 |
| CDY08051 | Canola | cytosol | 60.34 | 58.82 |
| Bra020749.1-P | Field mustard | cytosol | 59.48 | 57.98 |
| CDY05263 | Canola | cytosol | 59.48 | 57.98 |
| CDY24693 | Canola | cytosol | 58.62 | 57.14 |
| HORVU2Hr1G103010.2 | Barley | cytosol | 52.59 | 50.0 |
| HORVU2Hr1G046860.2 | Barley | cytosol, plastid | 55.17 | 40.0 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G049440.1 | EnsemblPlantsGene:HORVU5Hr1G049440 | Gene3D:3.10.20.90 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006914 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| InterPro:Atg8-like | InterPro:Ubiquitin-like_domsf | PANTHER:PTHR10969 | PANTHER:PTHR10969:SF25 | PFAM:PF02991 | SUPFAM:SSF54236 |
| UniParc:UPI000B47BBC2 | UniProt:A0A287R4Z8 | MapMan:19.3.3.1 | : | : | : |
Description
Autophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A287R4Z8]
Coordinates
chrchr5H:+:384019252..384025407
Molecular Weight (calculated)
13324.2 Da
IEP (calculated)
9.070
GRAVY (calculated)
-0.258
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSFKKEFTL EERANESAAM IAKYPGRIPV IVERFSRSNL PEMEKRKYLV PCDMPVGQFI FILRSRLHLS PGTALFVFVS NTLPQTGNLM GSVYDSYKDK
101: EDGFLYMCYS SEKTFG
101: EDGFLYMCYS SEKTFG
001: MKSFKEQYTL DERLAESREI IAKYPTRIPV IAEKYCKTDL PAIEKKKFLV PRDMSVGQFI YILSARLHLS PGKALFVFVN NTLPQTAALM DSVYESYKDD
101: DGFVYMCYSS EKTFG
101: DGFVYMCYSS EKTFG
Arabidopsis Description
ATG8IAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178VBL7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.