Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93087 | Canola | cytosol | 69.51 | 95.8 |
| Bra013172.1-P | Field mustard | cytosol | 69.51 | 95.8 |
| CDY50946 | Canola | cytosol | 68.9 | 94.96 |
| KRH25368 | Soybean | cytosol | 65.85 | 90.0 |
| KRH56143 | Soybean | cytosol | 65.24 | 89.17 |
| GSMUA_Achr4P21280_001 | Banana | cytosol | 63.41 | 87.39 |
| VIT_12s0059g00660.t01 | Wine grape | cytosol | 64.02 | 86.78 |
| GSMUA_Achr2P12710_001 | Banana | cytosol | 62.8 | 86.55 |
| GSMUA_Achr10P... | Banana | cytosol | 62.2 | 85.71 |
| AT1G62040.1 | Thale cress | cytosol | 60.98 | 84.03 |
| Solyc03g031650.2.1 | Tomato | cytosol | 61.59 | 82.11 |
| PGSC0003DMT400013025 | Potato | cytosol | 60.98 | 81.3 |
| AT4G04620.3 | Thale cress | cytosol | 56.71 | 76.23 |
| AT2G45170.1 | Thale cress | cytosol | 53.66 | 72.13 |
| AT3G60640.1 | Thale cress | cytosol | 52.44 | 71.07 |
| AT4G21980.2 | Thale cress | cytosol | 59.15 | 70.8 |
| AT4G16520.3 | Thale cress | extracellular | 45.73 | 61.98 |
| AT3G15580.1 | Thale cress | cytosol | 39.02 | 55.65 |
| AT3G06420.1 | Thale cress | cytosol | 37.2 | 51.26 |
Protein Annotations
| MapMan:19.3.3.1 | Gene3D:3.10.20.90 | EntrezGene:815112 | ProteinID:AEC05959.1 | ArrayExpress:AT2G05630 | EnsemblPlantsGene:AT2G05630 |
| RefSeq:AT2G05630 | TAIR:AT2G05630 | RefSeq:AT2G05630-TAIR-G | EnsemblPlants:AT2G05630.2 | TAIR:AT2G05630.2 | Symbol:ATG8D |
| Unigene:At.43087 | InterPro:Atg8-like | UniProt:F4IHC1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006914 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| RefSeq:NP_001154497.1 | PFAM:PF02991 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR10969 | PANTHER:PTHR10969:SF43 | SUPFAM:SSF54236 | UniParc:UPI0001A7B305 | InterPro:Ubiquitin-like_domsf | SEG:seg |
Description
ATG8DAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:F4IHC1]
Coordinates
chr2:-:2082986..2084882
Molecular Weight (calculated)
18858.1 Da
IEP (calculated)
9.316
GRAVY (calculated)
-0.027
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MAISSFKHEH PLVEMNIDVE VTKFHLSLLC SVVESLLFTG RRIAISVPWN PKILSLKKRQ AEAARIREKY PDRIPVIVER AEKSDVPDID RKKYLVPADL
101: TVGQFVYVVR KRIKLSPEKA IFIFVKNILP PTAAIMSAIY EEHKDEDGFL YMSYSGENTF GIFF
101: TVGQFVYVVR KRIKLSPEKA IFIFVKNILP PTAAIMSAIY EEHKDEDGFL YMSYSGENTF GIFF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.