Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94071 | Canola | cytosol | 91.97 | 91.97 |
| CDX98722 | Canola | cytosol | 83.21 | 91.94 |
| Bra019407.1-P | Field mustard | cytosol | 83.21 | 91.94 |
| Bra013578.1-P | Field mustard | cytosol | 81.75 | 91.8 |
| CDX79116 | Canola | cytosol | 81.75 | 91.8 |
| CDX82891 | Canola | cytosol | 81.75 | 91.8 |
| CDX82890 | Canola | cytosol | 80.29 | 88.71 |
| AT4G04620.3 | Thale cress | cytosol | 78.1 | 87.7 |
| GSMUA_Achr5P02890_001 | Banana | cytosol | 75.18 | 86.55 |
| AT1G62040.1 | Thale cress | cytosol | 74.45 | 85.71 |
| KRH36460 | Soybean | cytosol, mitochondrion | 74.45 | 85.71 |
| KRH11438 | Soybean | cytosol, mitochondrion | 74.45 | 85.71 |
| KRH51096 | Soybean | cytosol | 76.64 | 81.4 |
| KRH02062 | Soybean | cytosol | 76.64 | 81.4 |
| AT2G45170.1 | Thale cress | cytosol | 64.96 | 72.95 |
| AT3G60640.1 | Thale cress | cytosol | 61.31 | 69.42 |
| CDY31453 | Canola | cytosol | 65.69 | 66.67 |
| AT4G16520.3 | Thale cress | extracellular | 54.74 | 61.98 |
| AT2G05630.2 | Thale cress | cytosol | 70.8 | 59.15 |
| AT3G15580.1 | Thale cress | cytosol | 48.18 | 57.39 |
| AT3G06420.1 | Thale cress | cytosol | 46.72 | 53.78 |
Protein Annotations
| MapMan:19.3.3.1 | Gene3D:3.10.20.90 | EntrezGene:828287 | UniProt:A8MS84 | EMBL:AB073175 | ProteinID:AEE84537.1 |
| ProteinID:AEE84538.1 | EMBL:AF492759 | Symbol:APG8A | ArrayExpress:AT4G21980 | EnsemblPlantsGene:AT4G21980 | RefSeq:AT4G21980 |
| TAIR:AT4G21980 | RefSeq:AT4G21980-TAIR-G | EnsemblPlants:AT4G21980.2 | TAIR:AT4G21980.2 | EMBL:AY085349 | Unigene:At.24034 |
| InterPro:Atg8-like | EMBL:BT002024 | EMBL:BT006522 | ProteinID:CAA18101.1 | ProteinID:CAB79153.1 | GO:GO:0000421 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005776 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0006508 | GO:GO:0006810 | GO:GO:0006914 | GO:GO:0006950 | GO:GO:0006995 |
| GO:GO:0007154 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009987 | GO:GO:0009991 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016740 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0019776 | GO:GO:0019779 | GO:GO:0019786 | GO:GO:0031410 | GO:GO:0050832 |
| RefSeq:NP_001078424.1 | RefSeq:NP_567642.1 | ProteinID:OAO97287.1 | PFAM:PF02991 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR10969 | PANTHER:PTHR10969:SF47 | SUPFAM:SSF54236 | UniParc:UPI0001505585 |
| InterPro:Ubiquitin-like_domsf | : | : | : | : | : |
Description
APG8AAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A8MS84]
Coordinates
chr4:+:11655613..11657034
Molecular Weight (calculated)
15405.7 Da
IEP (calculated)
9.326
GRAVY (calculated)
-0.124
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MIFACLKFAE TNRIAMAKSS FKISNPLEAR MSESSRIREK YPDRIPVIVE KAGQSDVPDI DKKKYLVPAD LTVGQFVYVV RKRIKLGAEK AIFVFVKNTL
101: PPTAALMSAI YEEHKDEDGF LYMTYSGENT FGSLTVA
101: PPTAALMSAI YEEHKDEDGF LYMTYSGENT FGSLTVA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.