Factsheet for GSMUA_Achr5P02890_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P21280_001	Banana	cytosol	92.44	92.44
KRH36460	Soybean	cytosol, mitochondrion	89.92	89.92
KRH11438	Soybean	cytosol, mitochondrion	89.92	89.92
GSMUA_Achr2P12710_001	Banana	cytosol	89.92	89.92
GSMUA_Achr10P...	Banana	cytosol	89.08	89.08
GSMUA_Achr4P23720_001	Banana	cytosol	67.23	88.89
Bra029509.1-P	Field mustard	cytosol	89.08	88.33
CDY16657	Canola	cytosol	89.08	88.33
Os07t0512200-01	Rice	cytosol	87.39	87.39
CDX94567	Canola	cytosol	87.39	86.67
PGSC0003DMT400042494	Potato	cytosol	89.08	86.18
Solyc02g080590.2.1	Tomato	cytosol	89.08	86.18
TraesCS2A01G224000.1	Wheat	cytosol	85.71	85.71
TraesCS2D01G229900.1	Wheat	cytosol	85.71	85.71
TraesCS2B01G274200.1	Wheat	cytosol	85.71	85.71
EER99442	Sorghum	cytosol	84.87	84.87
CDX82891	Canola	cytosol	85.71	83.61
CDX79116	Canola	cytosol	85.71	83.61
Bra013578.1-P	Field mustard	cytosol	85.71	83.61
CDX98722	Canola	cytosol	86.55	83.06
Bra019407.1-P	Field mustard	cytosol	86.55	83.06
VIT_10s0116g01700.t01	Wine grape	cytosol	84.87	82.79
AT4G04620.3	Thale cress	cytosol	84.03	81.97
CDX82890	Canola	cytosol	84.87	81.45
KRH51096	Soybean	cytosol	87.39	80.62
KRH02062	Soybean	cytosol	87.39	80.62
AT4G21980.2	Thale cress	cytosol	86.55	75.18
CDX94071	Canola	cytosol	86.55	75.18
GSMUA_Achr4P27720_001	Banana	cytosol	78.99	74.6
HORVU2Hr1G046860.2	Barley	cytosol, plastid	85.71	63.75
GSMUA_Achr8P11170_001	Banana	cytosol	66.39	63.71
CDY31453	Canola	cytosol	68.91	60.74
GSMUA_Achr11P...	Banana	cytosol	58.82	56.45
GSMUA_Achr5P27270_001	Banana	cytosol	56.3	56.3
Zm00001d006474_P002	Maize	nucleus	83.19	47.37
GSMUA_Achr4P33470_001	Banana	mitochondrion	30.25	45.0

Protein Annotations

EnsemblPlants:GSMUA_Achr5P02890_001	EnsemblPlants:GSMUA_Achr5T02890_001	EnsemblPlantsGene:GSMUA_Achr5G02890_001	Gene3D:3.10.20.90	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006914	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	InterPro:Atg8-like	InterPro:Ubiquitin-like_domsf	PANTHER:PTHR10969	PANTHER:PTHR10969:SF47	PFAM:PF02991
SEG:seg	SUPFAM:SSF54236	UniParc:UPI0002968967	UniProt:M0SV68	MapMan:19.3.3.1	:

Description

Autophagy-related protein 8C [Source:GMGC_GENE;Acc:GSMUA_Achr5G02890_001]

Coordinates

chr5:+:1958380..1962490

Molecular Weight (calculated)

13550.3 Da

IEP (calculated)

9.290

GRAVY (calculated)

-0.448

Length

119 amino acids

Sequence
(BLAST)

001: MAKNSFKLDN PLERRQAEAA RIREKYPDRI PVIVEKAERS DIPDIDKKKY LVPADLTVGQ FVYVVRKRIK LGAEKAIFVF VKNSLPPTAS LMSAIYEENK
101: DEDGFLYMSY SGENTFGSA

Best Arabidopsis Sequence Match ( AT4G21980.2 )
(BLAST)

001: MIFACLKFAE TNRIAMAKSS FKISNPLEAR MSESSRIREK YPDRIPVIVE KAGQSDVPDI DKKKYLVPAD LTVGQFVYVV RKRIKLGAEK AIFVFVKNTL
101: PPTAALMSAI YEEHKDEDGF LYMTYSGENT FGSLTVA

Arabidopsis Description

APG8AAutophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A8MS84]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.