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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 5
  • golgi 6
  • plastid 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:nucleus, plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:golgi
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG95650
KRH04111
KRH19544
KRH24385
KRH28060
KRH29359
KRH30023
KRH32171
KRH51472
KRH52713
KRH57384
KRH60785
KRH62041
KRH62897
KRH67361
KRH77376

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G34660.1 KRG95650 AT2G31260.1 24249832
AT4G34660.1 KRH19544 AT2G31260.1 24249832
AT4G34660.1 KRH32171 AT2G31260.1 24249832
AT4G34660.1 KRH67361 AT2G31260.1 24249832
AT4G34660.1 KRH04111 AT2G45170.1 24249832
AT4G34660.1 KRH28060 AT2G45170.1 24249832
AT4G34660.1 KRH57384 AT2G45170.1 24249832
AT4G34660.1 KRH77376 AT2G45170.1 24249832
AT4G34660.1 KRH30023 AT3G61710.1 24249832
AT4G34660.1 KRH62897 AT3G61710.1 24249832
AT4G34660.1 KRH24385 AT4G34660.1 24249832
AT4G34660.1 KRH29359 AT4G34660.1 24249832
AT4G34660.1 KRH51472 AT4G34660.1 24249832
AT4G34660.1 KRH60785 AT4G34660.1 24249832
AT4G34660.1 KRH52713 AT5G11550.1 21798944
AT4G34660.1 KRH62041 AT5G11550.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH51472 Soybean cytosol 89.95 94.07
Zm00001d024355_P001 Maize cytosol 12.11 90.38
KRH29359 Soybean endoplasmic reticulum 81.19 84.91
KRH24385 Soybean endoplasmic reticulum 80.15 83.83
VIT_03s0038g00460.t01 Wine grape cytosol 76.8 80.32
Solyc01g110300.2.1 Tomato nucleus 74.48 78.53
PGSC0003DMT400008049 Potato mitochondrion 74.74 78.38
AT4G34660.1 Thale cress mitochondrion 71.91 75.82
Bra034642.1-P Field mustard cytosol 68.04 75.0
CDX69077 Canola mitochondrion 70.1 73.71
CDX75452 Canola mitochondrion 70.1 73.71
Bra011550.1-P Field mustard mitochondrion 70.1 73.71
GSMUA_Achr11P... Banana cytosol 69.33 72.51
GSMUA_Achr5P19940_001 Banana cytosol 69.33 72.51
CDY17473 Canola mitochondrion 68.3 72.01
CDX76295 Canola cytosol 68.04 71.93
Os10t0512700-01 Rice plasma membrane 68.56 71.89
EER91379 Sorghum cytosol 67.78 71.27
TraesCS1B01G202500.1 Wheat cytosol 67.78 71.27
TraesCS1A01G177700.1 Wheat cytosol 67.53 71.0
TraesCS1D01G176200.1 Wheat cytosol 67.53 71.0
Bra010715.1-P Field mustard cytosol 67.53 70.24
GSMUA_Achr8P11720_001 Banana cytosol 66.75 69.81
Zm00001d013860_P012 Maize cytosol 67.27 69.6
TraesCS2B01G406500.2 Wheat cytosol 64.95 68.11
GSMUA_Achr11P... Banana cytosol 65.46 68.1
OQU82036 Sorghum cytosol 64.43 67.93
TraesCS2A01G388400.1 Wheat cytosol 64.69 67.84
TraesCS2D01G386200.1 Wheat cytosol 64.69 67.84
Os04t0539800-01 Rice plasma membrane 64.43 67.75
Zm00001d002810_P001 Maize plasma membrane 63.92 67.39
Zm00001d032465_P002 Maize cytosol 67.78 67.26
HORVU1Hr1G047180.11 Barley cytosol 61.86 64.52
Zm00001d025955_P001 Maize cytosol, mitochondrion 62.11 63.59
CDY12114 Canola cytosol 19.33 63.03
CDY12115 Canola cytosol 67.78 62.17
CDX90304 Canola cytosol 67.27 61.85
HORVU2Hr1G092430.1 Barley cytosol 63.92 59.9
KRH42945 Soybean endoplasmic reticulum 46.91 52.3
KRH59070 Soybean cytosol 47.16 51.4
KRH76411 Soybean cytosol 41.49 44.48
KRH39714 Soybean cytosol 40.46 43.37
Protein Annotations
Gene3D:1.20.1270.60EntrezGene:100810746Gene3D:2.30.30.40MapMan:22.5.4.1.4EMBL:ACUP02002140InterPro:AH/BAR_dom_sf
ncoils:CoilEnsemblPlantsGene:GLYMA_04G009000GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0016020GO:GO:0016021UniProt:I1JSK2InterPro:IPR001452InterPro:IPR027267EnsemblPlants:KRH60785
ProteinID:KRH60785ProteinID:KRH60785.1PFAM:PF14604PFscan:PS50002PFscan:PS51257PANTHER:PTHR44109
PANTHER:PTHR44109:SF4InterPro:SH3-like_dom_sfInterPro:SH3_domainSMART:SM00326SUPFAM:SSF103657SUPFAM:SSF50044
TMHMM:TMhelixUniParc:UPI00023C1B05SEG:seg:::
Description
hypothetical protein
Coordinates
chr4:+:702042..706284
Molecular Weight (calculated)
43131.7 Da
IEP (calculated)
6.520
GRAVY (calculated)
-0.290
Length
388 amino acids
Sequence
(BLAST)
001: MKFLLLFFMI RFNSFFAPCF ISCSLMFLSF ACFLSIQAVL KQFGAGGYGG SDNMVTDEVE LQQHQKLEKL YISTRAGKHY QRDIVRGVEG YIVTGSKQVE
101: IGTKLSEDNR KYGADNTCTS GSTLSRAALN YAHARAQMEK ERGSLLKALG TQVAEPLRAM VMGAPLEDAR HLAQRYDRMR QEAEAQAIEV SKRQAKVRET
201: PGNAENAMKL EAAETKLQDL KTNMAILGKE AAAAMAAVEA QQQRLTLQRL IAMVEAEHAY HQRVLQILDQ LEGEMISERQ RIEAPPTPSV DSSMTPPPSY
301: EEVNGVCASQ AHNGSTDSMG YFLGEVLFPY HAESEVELNL SVGDYIVVRK VTNNGWAEGE CKGKAGWFPF GYIERRERVL ASKVAEVF
Best Arabidopsis Sequence Match ( AT1G31440.1 )
(BLAST)
001: MEAIRKQAAK LREQVARQQQ AVLKHLGHVN ADAVVVDEEE LHCHQKLQDL YSSTKAAKRL QRNIVRGLEG FIATGTKVVE IGLKFAEDFK KYGDENPDAN
101: TPLSRVAHHF GTSYKSVEGE RETLLGVLSE QVCEPIRTMI YSAPLEDARH LVNHYDRLRQ EVEAQATDVL RRRSKLKESD ISEEAYIKLK NSESRLAELK
201: SSMKTLGKEA TKAMLEVDDQ QQNVTSQRLR ALVEAERSYH RNALDILDKL HSEMIAEEEA IGSSPKSLPL HIEDSASLPQ QEPNSNSSGE IKSNPLGKIK
301: ASRREEIKSN PQEVTKPSPK DEMKSSPQEE TKSNHQKEIK SSPQEEIKKS NGSDDHHNHQ LLSQNDSYFL AKVVHPFDAQ APGELSLAVD DYVIVRQVAG
401: TGWSEGEYKG KAGWFPSAYV EKQEKAPASK IVESNSKQQ
Arabidopsis Description
SH3P1SH3 domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C865]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.