Factsheet for Solyc01g110300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g110300.2.1
Solyc04g008630.2.1
Solyc05g050390.2.1
Solyc08g007400.2.1
Solyc08g078820.2.1
Solyc11g071240.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34660.1	Solyc04g008630.2.1	AT2G31260.1	24249832
AT4G34660.1	Solyc08g007400.2.1	AT2G45170.1	24249832
AT4G34660.1	Solyc08g078820.2.1	AT2G45170.1	24249832
AT4G34660.1	Solyc05g050390.2.1	AT3G61710.1	24249832
AT4G34660.1	Solyc01g110300.2.1	AT4G34660.1	24249832
AT4G34660.1	Solyc11g071240.1.1	AT5G11550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008049	Potato	mitochondrion	99.73	99.19
Zm00001d024355_P001	Maize	cytosol	13.04	92.31
KRH51472	Soybean	cytosol	83.7	83.02
VIT_03s0038g00460.t01	Wine grape	cytosol	80.43	79.78
KRH29359	Soybean	endoplasmic reticulum	79.89	79.25
KRH24385	Soybean	endoplasmic reticulum	79.62	78.98
AT4G34660.1	Thale cress	mitochondrion	76.63	76.63
GSMUA_Achr11P...	Banana	cytosol	76.9	76.28
GSMUA_Achr5P19940_001	Banana	cytosol	76.63	76.01
Os10t0512700-01	Rice	plasma membrane	76.36	75.95
CDX75452	Canola	mitochondrion	76.09	75.88
Bra011550.1-P	Field mustard	mitochondrion	76.09	75.88
CDX69077	Canola	mitochondrion	75.82	75.61
EER91379	Sorghum	cytosol	75.27	75.07
TraesCS1B01G202500.1	Wheat	cytosol	75.0	74.8
Solyc07g032110.2.1	Tomato	cytosol	75.0	74.59
TraesCS1D01G176200.1	Wheat	cytosol	74.73	74.53
TraesCS1A01G177700.1	Wheat	cytosol	74.73	74.53
KRH60785	Soybean	endoplasmic reticulum	78.53	74.48
GSMUA_Achr8P11720_001	Banana	cytosol	74.18	73.58
GSMUA_Achr11P...	Banana	cytosol	74.46	73.46
CDY17473	Canola	mitochondrion	73.37	73.37
Zm00001d013860_P012	Maize	cytosol	74.73	73.33
CDX76295	Canola	cytosol	72.83	73.02
Bra034642.1-P	Field mustard	cytosol	69.29	72.44
Zm00001d032465_P002	Maize	cytosol	75.54	71.1
Bra010715.1-P	Field mustard	cytosol	70.92	69.97
OQU82036	Sorghum	cytosol	69.57	69.57
Zm00001d002810_P001	Maize	plasma membrane	68.75	68.75
TraesCS2B01G406500.2	Wheat	cytosol	69.02	68.65
TraesCS2A01G388400.1	Wheat	cytosol	68.75	68.38
TraesCS2D01G386200.1	Wheat	cytosol	68.75	68.38
Os04t0539800-01	Rice	plasma membrane	68.21	68.02
HORVU1Hr1G047180.11	Barley	cytosol	68.75	68.01
Zm00001d025955_P001	Maize	cytosol, mitochondrion	67.12	65.17
CDY12115	Canola	cytosol	71.47	62.17
CDX90304	Canola	cytosol	70.65	61.61
CDY12114	Canola	cytosol	19.84	61.34
HORVU2Hr1G092430.1	Barley	cytosol	68.75	61.11
Solyc02g071330.2.1	Tomato	cytosol	45.11	52.37
Solyc08g074780.2.1	Tomato	cytosol	48.64	49.45

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	InterPro:AH/BAR_dom_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005768	GO:GO:0005829	GO:GO:0005886	GO:GO:0006810	GO:GO:0007049
GO:GO:0008150	GO:GO:0009504	GO:GO:0009920	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0072583	InterPro:IPR001452	InterPro:IPR027267	UniProt:K4B3P3	PFAM:PF14604	PFscan:PS50002
PANTHER:PTHR44109	PANTHER:PTHR44109:SF4	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657
SUPFAM:SSF50044	EnsemblPlantsGene:Solyc01g110300.2	EnsemblPlants:Solyc01g110300.2.1	UniParc:UPI0002768F9C	SEG:seg	:

Description

SH3 domain-containing protein 2 [Source:Projected from Arabidopsis thaliana (AT4G34660) UniProtKB/Swiss-Prot;Acc:Q8VWF1]

Coordinates

chr1:-:97027202..97032786

Molecular Weight (calculated)

41041.8 Da

IEP (calculated)

6.809

GRAVY (calculated)

-0.581

Length

368 amino acids

Sequence
(BLAST)

001: MEAIRKQATR LREQVARQQQ AVLKQFGAGG YGSDLVTDEA EMQQHHKLER LYISTRAAKH FQRDIVRGVE GYIVTGSKQV EIGTKLSEDS RKYGAENTCT
101: SGTTLSKAAL GFSRARAQME KERGNLLKAL GTQVAEPLRA MVMGAPLEDA RHLAQRYDRM RQEAEAQAVE VSRRQAKLRE GTGHPDMAYK LEAAETKLDD
201: LKSNTNTLGK EAAAAMAAVE AQQQRLTLQR LIAMVESERS YHQRILQILD QLEAEMLSER QRIEAAPAPP LDTMPPPPSY EEVNGVSTSP VQNGSTDNMG
301: YFLGEVMYPY QAESDVELNL SVGEYIVIRK VSNNGWAEGE CKGRAGWFPF GYIERRDRVL ASKVAEVF

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.