Factsheet for TraesCS2B01G406500.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G177700.1
TraesCS1A01G389900.1
TraesCS1B01G202500.1
TraesCS1B01G418000.1
TraesCS1D01G176200.1
TraesCS1D01G398100.1
TraesCS2A01G388400.1
TraesCS2B01G406500.2
TraesCS2D01G386200.1
TraesCS3A01G266600.1
TraesCS3B01G300100.2
TraesCS3D01G266800.1
TraesCS4A01G079800.1
TraesCS4B01G224200.1
TraesCS4D01G224800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34660.1	TraesCS4A01G079800.1	AT2G31260.1	24249832
AT4G34660.1	TraesCS4B01G224200.1	AT2G31260.1	24249832
AT4G34660.1	TraesCS4D01G224800.1	AT2G31260.1	24249832
AT4G34660.1	TraesCS3A01G266600.1	AT3G61710.1	24249832
AT4G34660.1	TraesCS3B01G300100.2	AT3G61710.1	24249832
AT4G34660.1	TraesCS3D01G266800.1	AT3G61710.1	24249832
AT4G34660.1	TraesCS1A01G177700.1	AT4G34660.1	24249832
AT4G34660.1	TraesCS1B01G202500.1	AT4G34660.1	24249832
AT4G34660.1	TraesCS1D01G176200.1	AT4G34660.1	24249832
AT4G34660.1	TraesCS2A01G388400.1	AT4G34660.1	24249832
AT4G34660.1	TraesCS2B01G406500.2	AT4G34660.1	24249832
AT4G34660.1	TraesCS2D01G386200.1	AT4G34660.1	24249832
AT4G34660.1	TraesCS1A01G389900.1	AT5G11550.1	21798944
AT4G34660.1	TraesCS1B01G418000.1	AT5G11550.1	21798944
AT4G34660.1	TraesCS1D01G398100.1	AT5G11550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G386200.1	Wheat	cytosol	99.46	99.46
TraesCS2A01G388400.1	Wheat	cytosol	99.46	99.46
OQU82036	Sorghum	cytosol	88.11	88.59
Zm00001d002810_P001	Maize	plasma membrane	86.76	87.23
Os04t0539800-01	Rice	plasma membrane	85.95	86.18
HORVU2Hr1G092430.1	Barley	cytosol	95.95	85.75
Zm00001d025955_P001	Maize	cytosol, mitochondrion	84.59	82.59
GSMUA_Achr5P19940_001	Banana	cytosol	72.7	72.51
KRH51472	Soybean	cytosol	71.89	71.7
GSMUA_Achr11P...	Banana	cytosol	71.62	71.43
TraesCS1B01G202500.1	Wheat	cytosol	71.08	71.27
VIT_03s0038g00460.t01	Wine grape	cytosol	71.35	71.16
GSMUA_Achr8P11720_001	Banana	cytosol	71.08	70.89
KRH29359	Soybean	endoplasmic reticulum	70.27	70.08
VIT_18s0001g13530.t01	Wine grape	cytosol	68.92	69.29
Solyc01g110300.2.1	Tomato	nucleus	68.65	69.02
PGSC0003DMT400008049	Potato	mitochondrion	68.65	68.65
AT4G34660.1	Thale cress	mitochondrion	68.11	68.48
KRH24385	Soybean	endoplasmic reticulum	68.65	68.46
Bra011550.1-P	Field mustard	mitochondrion	67.57	67.75
CDX69077	Canola	mitochondrion	67.57	67.75
CDX75452	Canola	mitochondrion	67.57	67.75
CDY17473	Canola	mitochondrion	66.49	66.85
CDX76295	Canola	cytosol	65.95	66.48
Bra034642.1-P	Field mustard	cytosol	62.97	66.19
Solyc07g032110.2.1	Tomato	cytosol	65.14	65.14
KRH60785	Soybean	endoplasmic reticulum	68.11	64.95
PGSC0003DMT400035686	Potato	cytosol	64.86	64.86
Bra010715.1-P	Field mustard	cytosol	64.05	63.54
CDY12114	Canola	cytosol	19.19	59.66
CDX90304	Canola	cytosol	64.05	56.16
CDY12115	Canola	cytosol	63.78	55.79
TraesCS2B01G249500.1	Wheat	cytosol	45.14	48.41
TraesCS4B01G211900.1	Wheat	cytosol	45.95	44.62

Protein Annotations

EnsemblPlants:TraesCS2B01G406500.2	EnsemblPlantsGene:TraesCS2B01G406500	Gene3D:1.20.1270.60	Gene3D:2.30.30.40	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:AH/BAR_dom_sf	InterPro:IPR001452	InterPro:IPR027267	InterPro:SH3-like_dom_sf	InterPro:SH3_domain
ncoils:Coil	PANTHER:PTHR44109	PANTHER:PTHR44109:SF2	PFAM:PF14604	PFscan:PS50002	SEG:seg
SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044	MapMan:22.5.4.1.4	:	:

Description

No Description!

Coordinates

chr2B:-:575871805..575877504

Molecular Weight (calculated)

41229.7 Da

IEP (calculated)

5.756

GRAVY (calculated)

-0.516

Length

370 amino acids

Sequence
(BLAST)

001: MEALWKQASR LKEQVARQGV FKQFGAGGYG NSDNAFTDES EVKLHQRLEK LYLSTRAAKH FQRDVVRGVE GYIVTGSKQV EIGNKLSDDS QKYGIENTCT
101: SGNTLSRAAT YYGKARSLIE KERGNMLKAF GTQVAEPLRA MVMGAPLEDA RHLAQRYDRI RQEADAQVVE VSRRQSRVRE SAGNSDVISK LEAAEYKLEE
201: LKSNMVGLGK EAVSAMAAVE GQQQRLTLQR LIAMVEAERT YHQKVLEILD HLEEEMVSER QKIEAPPPPA AESYMSPPPP SYDEVNGMFA STSADQAVNS
301: VDFFLGEALD SFEAESEFEL NLSVGDIVIV RKVSSNGWAE GECKGKAGWF PHAYVERRER VLASKVPHIF

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.