Factsheet for TraesCS1A01G177700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G177700.1
TraesCS1A01G389900.1
TraesCS1B01G202500.1
TraesCS1B01G418000.1
TraesCS1D01G176200.1
TraesCS1D01G398100.1
TraesCS2A01G388400.1
TraesCS2B01G406500.2
TraesCS2D01G386200.1
TraesCS3A01G266600.1
TraesCS3B01G300100.2
TraesCS3D01G266800.1
TraesCS4A01G079800.1
TraesCS4B01G224200.1
TraesCS4D01G224800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34660.1	TraesCS4A01G079800.1	AT2G31260.1	24249832
AT4G34660.1	TraesCS4B01G224200.1	AT2G31260.1	24249832
AT4G34660.1	TraesCS4D01G224800.1	AT2G31260.1	24249832
AT4G34660.1	TraesCS3A01G266600.1	AT3G61710.1	24249832
AT4G34660.1	TraesCS3B01G300100.2	AT3G61710.1	24249832
AT4G34660.1	TraesCS3D01G266800.1	AT3G61710.1	24249832
AT4G34660.1	TraesCS1A01G177700.1	AT4G34660.1	24249832
AT4G34660.1	TraesCS1B01G202500.1	AT4G34660.1	24249832
AT4G34660.1	TraesCS1D01G176200.1	AT4G34660.1	24249832
AT4G34660.1	TraesCS2A01G388400.1	AT4G34660.1	24249832
AT4G34660.1	TraesCS2B01G406500.2	AT4G34660.1	24249832
AT4G34660.1	TraesCS2D01G386200.1	AT4G34660.1	24249832
AT4G34660.1	TraesCS1A01G389900.1	AT5G11550.1	21798944
AT4G34660.1	TraesCS1B01G418000.1	AT5G11550.1	21798944
AT4G34660.1	TraesCS1D01G398100.1	AT5G11550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G202500.1	Wheat	cytosol	99.73	99.73
TraesCS1D01G176200.1	Wheat	cytosol	99.46	99.46
Os10t0512700-01	Rice	plasma membrane	92.68	92.43
EER91379	Sorghum	cytosol	91.33	91.33
Zm00001d013860_P012	Maize	cytosol	91.06	89.6
HORVU1Hr1G047180.11	Barley	cytosol	90.24	89.52
Zm00001d024355_P001	Maize	cytosol	12.47	88.46
Zm00001d032465_P002	Maize	cytosol	89.16	84.14
GSMUA_Achr5P19940_001	Banana	cytosol	79.4	78.98
GSMUA_Achr11P...	Banana	cytosol	78.59	78.17
GSMUA_Achr8P11720_001	Banana	cytosol	77.24	76.82
KRH51472	Soybean	cytosol	75.61	75.2
VIT_03s0038g00460.t01	Wine grape	cytosol	75.34	74.93
Solyc01g110300.2.1	Tomato	nucleus	74.53	74.73
PGSC0003DMT400008049	Potato	mitochondrion	74.53	74.32
KRH29359	Soybean	endoplasmic reticulum	74.25	73.85
VIT_18s0001g13530.t01	Wine grape	cytosol	72.63	72.83
KRH24385	Soybean	endoplasmic reticulum	72.63	72.24
TraesCS2A01G388400.1	Wheat	cytosol	71.27	71.08
AT4G34660.1	Thale cress	mitochondrion	68.83	69.02
Bra011550.1-P	Field mustard	mitochondrion	68.29	68.29
CDX75452	Canola	mitochondrion	68.29	68.29
CDX69077	Canola	mitochondrion	68.02	68.02
CDY17473	Canola	mitochondrion	67.48	67.66
KRH60785	Soybean	endoplasmic reticulum	71.0	67.53
PGSC0003DMT400035686	Potato	cytosol	67.48	67.3
Solyc07g032110.2.1	Tomato	cytosol	67.48	67.3
CDX76295	Canola	cytosol	66.67	67.03
Bra034642.1-P	Field mustard	cytosol	63.41	66.48
Bra010715.1-P	Field mustard	cytosol	66.12	65.42
CDY12114	Canola	cytosol	19.51	60.5
CDX90304	Canola	cytosol	65.85	57.58
CDY12115	Canola	cytosol	65.58	57.21
TraesCS2A01G226200.1	Wheat	cytosol	44.72	47.83
TraesCS4A01G092400.1	Wheat	cytosol	47.7	45.6

Protein Annotations

EnsemblPlants:TraesCS1A01G177700.1	EnsemblPlantsGene:TraesCS1A01G177700	Gene3D:1.20.1270.60	Gene3D:2.30.30.40	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:AH/BAR_dom_sf	InterPro:IPR001452	InterPro:IPR027267	InterPro:SH3-like_dom_sf	InterPro:SH3_domain
ncoils:Coil	PANTHER:PTHR44109	PANTHER:PTHR44109:SF4	PFAM:PF14604	PFscan:PS50002	SMART:SM00326
SUPFAM:SSF103657	SUPFAM:SSF50044	MapMan:22.5.4.1.4	:	:	:

Description

No Description!

Coordinates

chr1A:+:320891334..320895452

Molecular Weight (calculated)

41272.3 Da

IEP (calculated)

7.552

GRAVY (calculated)

-0.520

Length

369 amino acids

Sequence
(BLAST)

001: MEAIRKQASK LREQVARQQQ AVLKQFGGGY ADSVFADEGE AQQHSKLEKL YISTRAAKHF QRDIVRGVEG YIVTGSKQVE LGNKLCEDGK KYGVENTCTS
101: GSTLSRAALS FAKARSLMEK ERANLLKAFG TQVAEPLRAM VMGAPLEDAR HLAQRYDRMR QEAEAQAIEV SKRQMKLRET SGNGDMISRL EAAESKLQEL
201: KSNMGTLGKE AVAAMTAVEA QQQRLTLQRL IAMVESERSY HQRVLQILDQ LEREMVSERQ RIEGAPPPVI ENSMPPPPAY EEVNGIFMRT PTVAELVETV
301: EHFLAEAIQS YRAESETELN LSTGDYVVVR KVSNNGWAEG ECRGKAGWFP SEFIEKRDRV LASKVAQVF

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.