Factsheet for GSMUA_Achr11P21800_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03240_001
GSMUA_Achr4P15230_001
GSMUA_Achr5P19940_001
GSMUA_Achr7P24520_001
GSMUA_Achr7P24530_001
GSMUA_Achr7P25140_001
GSMUA_Achr8P11170_001
GSMUA_Achr8P11720_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34660.1	GSMUA_Achr10P...	AT2G31260.1	24249832
AT4G34660.1	GSMUA_Achr10P...	AT2G31260.1	24249832
AT4G34660.1	GSMUA_Achr1P03240_001	AT2G31260.1	24249832
AT4G34660.1	GSMUA_Achr11P...	AT2G45170.1	24249832
AT4G34660.1	GSMUA_Achr8P11170_001	AT2G45170.1	24249832
AT4G34660.1	GSMUA_Achr7P24520_001	AT3G61710.1	24249832
AT4G34660.1	GSMUA_Achr7P24530_001	AT3G61710.1	24249832
AT4G34660.1	GSMUA_Achr11P...	AT4G34660.1	24249832
AT4G34660.1	GSMUA_Achr11P...	AT4G34660.1	24249832
AT4G34660.1	GSMUA_Achr5P19940_001	AT4G34660.1	24249832
AT4G34660.1	GSMUA_Achr8P11720_001	AT4G34660.1	24249832
AT4G34660.1	GSMUA_Achr4P15230_001	AT5G11550.1	21798944
AT4G34660.1	GSMUA_Achr7P25140_001	AT5G11550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P19940_001	Banana	cytosol	89.22	89.22
Zm00001d024355_P001	Maize	cytosol	12.13	86.54
GSMUA_Achr8P11720_001	Banana	cytosol	84.91	84.91
VIT_03s0038g00460.t01	Wine grape	cytosol	79.51	79.51
Os10t0512700-01	Rice	plasma membrane	78.44	78.65
TraesCS1A01G177700.1	Wheat	cytosol	78.17	78.59
TraesCS1B01G202500.1	Wheat	cytosol	77.9	78.32
EER91379	Sorghum	cytosol	77.9	78.32
TraesCS1D01G176200.1	Wheat	cytosol	77.63	78.05
KRH51472	Soybean	cytosol	77.63	77.63
Zm00001d013860_P012	Maize	cytosol	78.17	77.33
VIT_18s0001g13530.t01	Wine grape	cytosol	76.55	77.17
Solyc01g110300.2.1	Tomato	nucleus	76.28	76.9
KRH29359	Soybean	endoplasmic reticulum	76.82	76.82
KRH24385	Soybean	endoplasmic reticulum	76.55	76.55
PGSC0003DMT400008049	Potato	mitochondrion	76.28	76.49
CDX75452	Canola	mitochondrion	73.32	73.71
Bra011550.1-P	Field mustard	mitochondrion	73.32	73.71
Zm00001d032465_P002	Maize	cytosol	77.63	73.66
AT4G34660.1	Thale cress	mitochondrion	73.05	73.64
CDX69077	Canola	mitochondrion	73.05	73.44
HORVU1Hr1G047180.11	Barley	cytosol	72.51	72.31
OQU82036	Sorghum	cytosol	71.7	72.28
CDY17473	Canola	mitochondrion	71.43	72.01
Solyc07g032110.2.1	Tomato	cytosol	71.7	71.89
GSMUA_Achr11P...	Banana	cytosol	72.24	71.85
Zm00001d002810_P001	Maize	plasma membrane	71.16	71.74
CDX76295	Canola	cytosol	70.89	71.66
TraesCS2B01G406500.2	Wheat	cytosol	71.43	71.62
PGSC0003DMT400035686	Potato	cytosol	71.16	71.35
TraesCS2A01G388400.1	Wheat	cytosol	71.16	71.35
TraesCS2D01G386200.1	Wheat	cytosol	71.16	71.35
Os04t0539800-01	Rice	plasma membrane	70.08	70.46
Bra034642.1-P	Field mustard	cytosol	66.85	70.45
Bra010715.1-P	Field mustard	cytosol	70.08	69.71
KRH60785	Soybean	endoplasmic reticulum	72.51	69.33
Zm00001d025955_P001	Maize	cytosol, mitochondrion	68.73	67.28
HORVU2Hr1G092430.1	Barley	cytosol	70.89	63.53
CDY12114	Canola	cytosol	19.95	62.18
CDX90304	Canola	cytosol	70.08	61.61
CDY12115	Canola	cytosol	69.27	60.76
GSMUA_Achr9P02630_001	Banana	mitochondrion	42.05	49.68
GSMUA_Achr9P02620_001	Banana	cytosol	6.2	43.4
GSMUA_Achr6P01240_001	Banana	cytosol	50.67	39.66
GSMUA_Achr6P29510_001	Banana	cytosol	40.97	29.63

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	InterPro:AH/BAR_dom_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr11G21800_001	EnsemblPlants:GSMUA_Achr11P21800_001	EnsemblPlants:GSMUA_Achr11T21800_001	InterPro:IPR001452
InterPro:IPR027267	UniProt:M0RUB0	PFAM:PF14604	PRINTS:PR00499	PFscan:PS50002	PANTHER:PTHR44109
PANTHER:PTHR44109:SF4	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044
UniParc:UPI000294D076	:	:	:	:	:

Description

src homology-3 domain protein 3, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G21800_001]

Coordinates

chr11:+:22264293..22270137

Molecular Weight (calculated)

41333.1 Da

IEP (calculated)

6.550

GRAVY (calculated)

-0.540

Length

371 amino acids

Sequence
(BLAST)

001: MEAIRKQASK LREQVARQQQ AVFKQFGGSV YGGSDNVITD SPEYQQHQKL EKLYISTRAA KHFQRDIVRG VEGYIVTGSK QIEIGNKLSE DSRKYGGENT
101: CTSGNTLSKG ALSFGRARAQ MENERGNLLK ALGTQVAEPL RAMVMGAPLE DARHLAQRYD RMRQDTEAQA IEVSKRQIKV RETVGGGDYI SKLEAAEAKL
201: QELKSNMAVL GKEAVAAMTA VEAQQQRLTL QRLIAMVESE RTYHQKVLQI LEQLEAEMLS ERQRIEASPN PATENFVPPP PSYEEANGIF ANSTGDTSTD
301: TMEYFLAEVI QSYQAETDVE LNLSVGDYVV VRKVSNNGWA EGECKGKAGW FPCAYIERRD RVLASKIVQI L

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.