Factsheet for Bra011550.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000376.1-P
Bra003310.1-P
Bra003466.1-P
Bra008954.1-P
Bra011550.1-P
Bra021714.1-P
Bra023329.1-P
Bra034642.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34660.1	Bra021714.1-P	AT2G31260.1	24249832
AT4G34660.1	Bra000376.1-P	AT2G45170.1	24249832
AT4G34660.1	Bra003310.1-P	AT2G45170.1	24249832
AT4G34660.1	Bra003466.1-P	AT3G61710.1	24249832
AT4G34660.1	Bra011550.1-P	AT4G34660.1	24249832
AT4G34660.1	Bra034642.1-P	AT4G34660.1	24249832
AT4G34660.1	Bra008954.1-P	AT5G11550.1	21798944
AT4G34660.1	Bra023329.1-P	AT5G11550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75452	Canola	mitochondrion	100.0	100.0
CDX69077	Canola	mitochondrion	99.73	99.73
AT4G34660.1	Thale cress	mitochondrion	94.04	94.29
Bra034642.1-P	Field mustard	cytosol	86.18	90.34
Zm00001d024355_P001	Maize	cytosol	12.47	88.46
KRH51472	Soybean	cytosol	78.32	77.9
KRH29359	Soybean	endoplasmic reticulum	78.32	77.9
KRH24385	Soybean	endoplasmic reticulum	78.05	77.63
Solyc01g110300.2.1	Tomato	nucleus	75.88	76.09
PGSC0003DMT400008049	Potato	mitochondrion	75.88	75.68
VIT_03s0038g00460.t01	Wine grape	cytosol	74.8	74.39
GSMUA_Achr5P19940_001	Banana	cytosol	73.98	73.58
GSMUA_Achr11P...	Banana	cytosol	73.71	73.32
GSMUA_Achr8P11720_001	Banana	cytosol	71.54	71.16
KRH60785	Soybean	endoplasmic reticulum	73.71	70.1
Bra010715.1-P	Field mustard	cytosol	70.73	69.97
EER91379	Sorghum	cytosol	69.11	69.11
Os10t0512700-01	Rice	plasma membrane	69.11	68.92
TraesCS1A01G177700.1	Wheat	cytosol	68.29	68.29
TraesCS1B01G202500.1	Wheat	cytosol	68.02	68.02
TraesCS1D01G176200.1	Wheat	cytosol	67.75	67.75
TraesCS2B01G406500.2	Wheat	cytosol	67.75	67.57
Zm00001d013860_P012	Maize	cytosol	68.56	67.47
OQU82036	Sorghum	cytosol	67.21	67.39
TraesCS2D01G386200.1	Wheat	cytosol	67.48	67.3
Os04t0539800-01	Rice	plasma membrane	67.21	67.21
TraesCS2A01G388400.1	Wheat	cytosol	67.21	67.03
Zm00001d002810_P001	Maize	plasma membrane	66.4	66.58
GSMUA_Achr11P...	Banana	cytosol	66.4	65.68
Zm00001d032465_P002	Maize	cytosol	69.38	65.47
Zm00001d025955_P001	Maize	cytosol, mitochondrion	65.58	63.85
HORVU1Hr1G047180.11	Barley	cytosol	62.6	62.1
HORVU2Hr1G092430.1	Barley	cytosol	67.21	59.9
Bra012620.1-P	Field mustard	mitochondrion	48.78	51.28
Bra038424.1-P	Field mustard	cytosol	46.07	39.26

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	InterPro:AH/BAR_dom_sf	EnsemblPlantsGene:Bra011550	EnsemblPlants:Bra011550.1
EnsemblPlants:Bra011550.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001452
InterPro:IPR027267	UniProt:M4D4Z3	PFAM:PF14604	PFscan:PS50002	PANTHER:PTHR44109	PANTHER:PTHR44109:SF4
InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044	UniParc:UPI000254551A
SEG:seg	:	:	:	:	:

Description

AT4G34660 (E=2e-190) | SH3 domain-containing protein 2 (SH3P2)

Coordinates

chrA01:+:1717626..1720042

Molecular Weight (calculated)

41117.6 Da

IEP (calculated)

7.083

GRAVY (calculated)

-0.653

Length

369 amino acids

Sequence
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG HGSGLSDNAE LHQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALS YGRARAQMEK ERGNMLKALG TQVAEPLRAM VMGAPLEDAR HLAQRYDRIR QEAEAQATEV ARRQAKARES QGHPDILTKL ESAEAKLQDL
201: KANMTTLGKE AASALSSVED QQQKLTLERL ISMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPTTPSS NADNMPPPPS YEEANGVFAS HMHDTSTDSM
301: GYFLGEVLFP YHGVTDVELS LTAGEYVVVR KVTGNGWAEG ECKGKAGWFP YEYIERRERV LASKVSEVF

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.