CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91379
EES01994
EES19935
KXG33125
KXG38175
OQU82036
OQU92911

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34660.1	KXG38175	AT2G31260.1	24249832
AT4G34660.1	OQU92911	AT2G31260.1	24249832
AT4G34660.1	EES01994	AT3G61710.1	24249832
AT4G34660.1	KXG33125	AT3G61710.1	24249832
AT4G34660.1	EER91379	AT4G34660.1	24249832
AT4G34660.1	OQU82036	AT4G34660.1	24249832
AT4G34660.1	EES19935	AT5G11550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013860_P012	Maize	cytosol	97.02	95.47
Zm00001d024355_P001	Maize	cytosol	13.28	94.23
Os10t0512700-01	Rice	plasma membrane	93.5	93.24
TraesCS1B01G202500.1	Wheat	cytosol	91.6	91.6
TraesCS1A01G177700.1	Wheat	cytosol	91.33	91.33
TraesCS1D01G176200.1	Wheat	cytosol	91.33	91.33
Zm00001d032465_P002	Maize	cytosol	95.12	89.77
HORVU1Hr1G047180.11	Barley	cytosol	84.01	83.33
GSMUA_Achr5P19940_001	Banana	cytosol	79.13	78.71
GSMUA_Achr11P...	Banana	cytosol	78.32	77.9
GSMUA_Achr8P11720_001	Banana	cytosol	77.24	76.82
VIT_03s0038g00460.t01	Wine grape	cytosol	76.42	76.01
KRH51472	Soybean	cytosol	75.88	75.47
Solyc01g110300.2.1	Tomato	nucleus	75.07	75.27
PGSC0003DMT400008049	Potato	mitochondrion	75.07	74.86
VIT_18s0001g13530.t01	Wine grape	cytosol	73.71	73.91
KRH29359	Soybean	endoplasmic reticulum	73.44	73.05
OQU82036	Sorghum	cytosol	71.54	71.74
KRH24385	Soybean	endoplasmic reticulum	72.09	71.7
AT4G34660.1	Thale cress	mitochondrion	69.65	69.84
Bra011550.1-P	Field mustard	mitochondrion	69.11	69.11
CDX75452	Canola	mitochondrion	69.11	69.11
CDX69077	Canola	mitochondrion	68.83	68.83
CDY17473	Canola	mitochondrion	67.75	67.93
PGSC0003DMT400035686	Potato	cytosol	68.02	67.84
KRH60785	Soybean	endoplasmic reticulum	71.27	67.78
CDX76295	Canola	cytosol	67.21	67.57
Solyc07g032110.2.1	Tomato	cytosol	67.75	67.57
Bra034642.1-P	Field mustard	cytosol	63.41	66.48
Bra010715.1-P	Field mustard	cytosol	66.67	65.95
CDY12114	Canola	cytosol	20.87	64.71
CDX90304	Canola	cytosol	66.4	58.06
CDY12115	Canola	cytosol	66.12	57.68
EER99434	Sorghum	cytosol	47.15	50.0
OQU92866	Sorghum	cytosol	46.34	45.0

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	EntrezGene:8065168	InterPro:AH/BAR_dom_sf	UniProt:C5WW80
ncoils:Coil	EnsemblPlants:EER91379	ProteinID:EER91379	ProteinID:EER91379.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001452	InterPro:IPR027267	PFAM:PF14604	PFscan:PS50002	PANTHER:PTHR44109
PANTHER:PTHR44109:SF4	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	EnsemblPlantsGene:SORBI_3001G196100	SUPFAM:SSF103657
SUPFAM:SSF50044	unigene:Sbi.5434	UniParc:UPI0001A8240B	RefSeq:XP_002464381.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:17628606..17632969

Molecular Weight (calculated)

41233.3 Da

IEP (calculated)

7.496

GRAVY (calculated)

-0.500

Length

369 amino acids

Sequence
(BLAST)

001: MEAIRKQASK LREQVARQQQ AVMKQFGGGY GADGVFADEA EAQQHSKLEK LYISTRAAKH FQRDIVRGVE GYIVTGSKQV EIGNKLCEDG KKYGTENTCT
101: SGSTLSKAAL SFAKARSMME KERGNLLKAL GTQVAEPLRA MVMGAPLEDA RHLAQRYDRM RQEAEAQAIE VSKRQMKLRE ASGNSDMVAR LEAAESKLQE
201: LKSNMGVLGK EAVAAMTAVE AQQQRLTLQR LIALVESERN YHQKVLQVLD QLEREMVFER QRIEGAPPPV VESSMPPPPA YEEVNGIFMR NTVAELVETV
301: EYFLAEAIQS YRAESDTELN LSAGDYIVVR KVSNNGWAEG ECRGKAGWFP YDYIEKRERV LASKVAQVF

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.