CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67858
CDX69077
CDX69749
CDX75452
CDX76295
CDX78430
CDX83397
CDX85708
CDX91209
CDX95634
CDY10782
CDY15410
CDY17473
CDY19070
CDY24745
CDY25058
CDY25070
CDY37030
CDY56249
CDY68531
CDY70494

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34660.1	CDY10782	AT2G31260.1	24249832
AT4G34660.1	CDY15410	AT2G31260.1	24249832
AT4G34660.1	CDY19070	AT2G31260.1	24249832
AT4G34660.1	CDY24745	AT2G31260.1	24249832
AT4G34660.1	CDX83397	AT2G45170.1	24249832
AT4G34660.1	CDX95634	AT2G45170.1	24249832
AT4G34660.1	CDY37030	AT2G45170.1	24249832
AT4G34660.1	CDY56249	AT2G45170.1	24249832
AT4G34660.1	CDX67858	AT3G61710.1	24249832
AT4G34660.1	CDY25058	AT3G61710.1	24249832
AT4G34660.1	CDY25070	AT3G61710.1	24249832
AT4G34660.1	CDY70494	AT3G61710.1	24249832
AT4G34660.1	CDX69077	AT4G34660.1	24249832
AT4G34660.1	CDX75452	AT4G34660.1	24249832
AT4G34660.1	CDX76295	AT4G34660.1	24249832
AT4G34660.1	CDY17473	AT4G34660.1	24249832
AT4G34660.1	CDX69749	AT5G11550.1	21798944
AT4G34660.1	CDX78430	AT5G11550.1	21798944
AT4G34660.1	CDX85708	AT5G11550.1	21798944
AT4G34660.1	CDX91209	AT5G11550.1	21798944
AT4G34660.1	CDY68531	AT5G11550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76295	Canola	cytosol	95.65	95.91
CDX75452	Canola	mitochondrion	91.3	91.06
AT4G34660.1	Thale cress	mitochondrion	91.03	91.03
CDX69077	Canola	mitochondrion	91.03	90.79
Zm00001d024355_P001	Maize	cytosol	12.23	86.54
KRH29359	Soybean	endoplasmic reticulum	76.63	76.01
KRH51472	Soybean	cytosol	76.36	75.74
KRH24385	Soybean	endoplasmic reticulum	76.09	75.47
VIT_03s0038g00460.t01	Wine grape	cytosol	74.46	73.85
Solyc01g110300.2.1	Tomato	nucleus	73.37	73.37
PGSC0003DMT400008049	Potato	mitochondrion	73.37	72.97
GSMUA_Achr5P19940_001	Banana	cytosol	72.83	72.24
GSMUA_Achr11P...	Banana	cytosol	72.01	71.43
GSMUA_Achr8P11720_001	Banana	cytosol	70.92	70.35
KRH60785	Soybean	endoplasmic reticulum	72.01	68.3
EER91379	Sorghum	cytosol	67.93	67.75
Os10t0512700-01	Rice	plasma membrane	67.93	67.57
TraesCS1A01G177700.1	Wheat	cytosol	67.66	67.48
TraesCS1B01G202500.1	Wheat	cytosol	67.39	67.21
TraesCS1D01G176200.1	Wheat	cytosol	67.12	66.94
Zm00001d013860_P012	Maize	cytosol	68.21	66.93
TraesCS2B01G406500.2	Wheat	cytosol	66.85	66.49
TraesCS2A01G388400.1	Wheat	cytosol	66.58	66.22
TraesCS2D01G386200.1	Wheat	cytosol	66.58	66.22
OQU82036	Sorghum	cytosol	66.03	66.03
Zm00001d002810_P001	Maize	plasma membrane	65.22	65.22
Os04t0539800-01	Rice	plasma membrane	65.22	65.04
GSMUA_Achr11P...	Banana	cytosol	65.49	64.61
Zm00001d032465_P002	Maize	cytosol	67.93	63.94
Zm00001d025955_P001	Maize	cytosol, mitochondrion	64.67	62.8
CDY12114	Canola	cytosol	19.84	61.34
HORVU1Hr1G047180.11	Barley	cytosol	61.68	61.02
CDY12115	Canola	cytosol	69.84	60.76
CDX90304	Canola	cytosol	69.57	60.66
HORVU2Hr1G092430.1	Barley	cytosol	66.85	59.42
CDX90424	Canola	mitochondrion	48.1	50.43
CDY01515	Canola	cytosol, mitochondrion	47.83	50.14
CDY27149	Canola	cytosol	45.65	38.8
CDY12418	Canola	cytosol	45.38	38.57
CDY12310	Canola	nucleus	13.32	21.97

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	UniProt:A0A078FYR4	InterPro:AH/BAR_dom_sf	EnsemblPlants:CDY17473
ProteinID:CDY17473	ProteinID:CDY17473.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00095650001	InterPro:IPR001452	InterPro:IPR027267	PFAM:PF14604	PFscan:PS50002	PANTHER:PTHR44109
PANTHER:PTHR44109:SF4	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044
UniParc:UPI0004EE1F41	SEG:seg	:	:	:	:

Description

BnaC03g65900DBnaC03g65900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYR4]

Coordinates

chrLK032074:-:68701..71396

Molecular Weight (calculated)

40960.4 Da

IEP (calculated)

7.083

GRAVY (calculated)

-0.628

Length

368 amino acids

Sequence
(BLAST)

001: MDALRKQASR IREQVARQAV FKQFGGGGHG SGLSDDAELH QHQKLEKLYI STRAAKHYQR DIVRGVEGYI VTGSKQVEIG TKLSEDSRKY GSENTCTNGN
101: VLTRAALSYG RARAQMEQER GNILKALGTQ VAEPLRAMVL GAPLEDARHL AQRYDRMRQE AEAQQATEVA RRQAKARESQ GNPDIFMKLE SADAKLQDLK
201: SNMSILGKEA ASALSSVEDQ QQKLTLERLI SMVESERGYH QRVLQILDQL EGEMVSERQR IEAPTTPSST DNMPPPPSYE EANGVFASSH MHATPTDSMS
301: YFLGEVLFPY HGVTNVELSL STGEHVVVRK VTGSGWAEGE CKGKAGWFPY EYIERRERVL ASKVSEVF

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.