CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27149	Canola	cytosol	89.15	89.15
AT1G31440.1	Thale cress	cytosol	88.22	87.02
VIT_02s0087g00190.t01	Wine grape	cytosol	48.73	56.87
PGSC0003DMT400077295	Potato	cytosol	46.88	56.08
KRH76411	Soybean	cytosol	46.42	55.52
Solyc08g074780.2.1	Tomato	cytosol	46.19	55.25
KRH39714	Soybean	cytosol	46.19	55.25
OQU92866	Sorghum	cytosol	45.5	51.84
TraesCS4B01G211900.1	Wheat	cytosol	42.03	47.77
TraesCS4D01G212700.1	Wheat	cytosol	42.49	47.67
TraesCS4A01G092400.1	Wheat	cytosol	42.49	47.67
Os03t0266700-01	Rice	plasma membrane	43.19	47.46
CDX69077	Canola	mitochondrion	39.03	45.8
CDX75452	Canola	mitochondrion	39.03	45.8
Zm00001d028558_P003	Maize	cytosol	41.57	45.57
CDX76295	Canola	cytosol	38.57	45.5
CDY17473	Canola	mitochondrion	38.57	45.38
CDY12114	Canola	cytosol	11.78	42.86
CDX90424	Canola	mitochondrion	33.95	41.88
CDY01515	Canola	cytosol, mitochondrion	33.72	41.6
CDY12115	Canola	cytosol	39.49	40.43
GSMUA_Achr6P01240_001	Banana	cytosol	44.11	40.3
CDX90304	Canola	cytosol	38.57	39.57
HORVU4Hr1G060770.2	Barley	cytosol	38.11	39.38
CDY12310	Canola	nucleus	17.55	34.08

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:35.1	UniProt:A0A078FJX3	InterPro:AH/BAR_dom_sf	EnsemblPlants:CDY12418
ProteinID:CDY12418	ProteinID:CDY12418.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00061662001	InterPro:IPR001452	InterPro:IPR027267	PFAM:PF14604	PFscan:PS50002	PANTHER:PTHR44109
PANTHER:PTHR44109:SF1	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044
UniParc:UPI0004EB0CBA	SEG:seg	:	:	:	:

Description

BnaC08g09070DBnaC08g09070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJX3]

Coordinates

chrLK032022:+:109909..112616

Molecular Weight (calculated)

48534.9 Da

IEP (calculated)

6.268

GRAVY (calculated)

-0.760

Length

433 amino acids

Sequence
(BLAST)

001: MEAIRKQAAK LREQVARQQQ AVLKHLGHVN ADAVVVDEEE LHCHQKLQEL YSSTKAAKRL QRNIVRGLEG FIATGTKVVE IGLKFAEDCK KYGDENPDAN
101: TPLSRVAHHF GTSYKSVEDG RETLLGVLSE QVCEPIRTMI YSAPLEDARH LVNHYDRLRQ EVEAQATDVL RRRSKLKESD VSEEAYMKLK NSESRLADLK
201: SSMKTLGKEA TKAMLEVDNQ QQSVTYQRLR TLVEAEISYH RNALDILDKL HSEMIAGEEA IESSPKSLPL PLHLEDIVSH PQASHSGEIK SNHQGETKHT
301: TPHEEVTKPN PKEDMESSPE VEIKSKPQKE IKSSSPQEDT KTSNGSDDHH SHQQLLSQND SYFLAKVVHP FDAQAPGELS LAVDDYVIVR QVAGTGWSEG
401: EYKGKAGWFP SAYVEKQEKA PASKIVEANL NQQ

Best Arabidopsis Sequence Match ( AT1G31440.1 )
(BLAST)

001: MEAIRKQAAK LREQVARQQQ AVLKHLGHVN ADAVVVDEEE LHCHQKLQDL YSSTKAAKRL QRNIVRGLEG FIATGTKVVE IGLKFAEDFK KYGDENPDAN
101: TPLSRVAHHF GTSYKSVEGE RETLLGVLSE QVCEPIRTMI YSAPLEDARH LVNHYDRLRQ EVEAQATDVL RRRSKLKESD ISEEAYIKLK NSESRLAELK
201: SSMKTLGKEA TKAMLEVDDQ QQNVTSQRLR ALVEAERSYH RNALDILDKL HSEMIAEEEA IGSSPKSLPL HIEDSASLPQ QEPNSNSSGE IKSNPLGKIK
301: ASRREEIKSN PQEVTKPSPK DEMKSSPQEE TKSNHQKEIK SSPQEEIKKS NGSDDHHNHQ LLSQNDSYFL AKVVHPFDAQ APGELSLAVD DYVIVRQVAG
401: TGWSEGEYKG KAGWFPSAYV EKQEKAPASK IVESNSKQQ

Arabidopsis Description

SH3P1SH3 domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C865]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.