Factsheet for Os03t0266700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92866	Sorghum	cytosol	77.92	80.79
TraesCS4B01G211900.1	Wheat	cytosol	77.67	80.31
TraesCS4D01G212700.1	Wheat	cytosol	77.92	79.53
TraesCS4A01G092400.1	Wheat	cytosol	77.41	79.02
Zm00001d028558_P003	Maize	cytosol	73.86	73.67
HORVU4Hr1G060770.2	Barley	cytosol	70.56	66.35
VIT_02s0087g00190.t01	Wine grape	cytosol	55.33	58.76
KRH76411	Soybean	cytosol	48.98	53.31
Solyc08g074780.2.1	Tomato	cytosol	48.22	52.49
KRH39714	Soybean	cytosol	47.97	52.21
GSMUA_Achr6P01240_001	Banana	cytosol	62.69	52.11
PGSC0003DMT400077295	Potato	cytosol	47.72	51.93
Os10t0512700-01	Rice	plasma membrane	44.67	47.57
Os04t0539800-01	Rice	plasma membrane	42.64	45.53
CDY27149	Canola	cytosol	47.72	43.42
Bra038424.1-P	Field mustard	cytosol	47.72	43.42
AT1G31440.1	Thale cress	cytosol	48.22	43.28
CDY12418	Canola	cytosol	47.46	43.19
Os07t0508300-01	Rice	plasma membrane	37.31	42.24
CDY12310	Canola	nucleus	13.71	24.22

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:35.1	EntrezGene:4332358	ProteinID:ABF95153.1	InterPro:AH/BAR_dom_sf
EMBL:AK072831	ProteinID:BAF11572.1	ProteinID:BAS83417.1	ncoils:Coil	ProteinID:EAZ26376.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001452	InterPro:IPR027267	EnsemblPlantsGene:Os03g0266700	EnsemblPlants:Os03t0266700-01
PFAM:PF14604	PFscan:PS50002	PANTHER:PTHR44109	PANTHER:PTHR44109:SF1	UniProt:Q10NK5	InterPro:SH3-like_dom_sf
InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044	UniParc:UPI0000DB4592	RefSeq:XP_015627859.1
SEG:seg	:	:	:	:	:

Description

Src homology-3 domain containing protein. (Os03t0266700-01)

Coordinates

chr3:+:8819434..8824333

Molecular Weight (calculated)

44667.1 Da

IEP (calculated)

5.878

GRAVY (calculated)

-0.793

Length

394 amino acids

Sequence
(BLAST)

001: METLRKQASK LREHVAKQQQ AVRKQFSARY NQDPSLVDEA ELECHQNLQR LYNSTRAAKH FQRSIVRGVE GFIAVSTKQM EIVKKLAEDC CRYGNDNQNF
101: GFILARASVE FGNSHSQMEK ERENLLKFLG EQVFEPLREM IMSAPLEDAR LLTYRYQRIR QDMESQIADV MRKQLKSKES SGNADNSVKL QHAESKLSEL
201: RTTLSALGRE ATAAMEAVEV QQQQVTFDRL LAMVDAERAY HQNAADILNK LHDEMVQAKH HDEPENHYDE TSSDPKTAAT HEHSRSTSED HIFTNTSEPT
301: RTETSEPTRT ETSEPTRNGQ EVHYVGEVIH PFDAQADGEL SISVGDYVVV RQVAPNGWSE GECKGKAGWF PSAYVEQRDK APASKVIEPG LLTT

Best Arabidopsis Sequence Match ( AT1G31440.1 )
(BLAST)

001: MEAIRKQAAK LREQVARQQQ AVLKHLGHVN ADAVVVDEEE LHCHQKLQDL YSSTKAAKRL QRNIVRGLEG FIATGTKVVE IGLKFAEDFK KYGDENPDAN
101: TPLSRVAHHF GTSYKSVEGE RETLLGVLSE QVCEPIRTMI YSAPLEDARH LVNHYDRLRQ EVEAQATDVL RRRSKLKESD ISEEAYIKLK NSESRLAELK
201: SSMKTLGKEA TKAMLEVDDQ QQNVTSQRLR ALVEAERSYH RNALDILDKL HSEMIAEEEA IGSSPKSLPL HIEDSASLPQ QEPNSNSSGE IKSNPLGKIK
301: ASRREEIKSN PQEVTKPSPK DEMKSSPQEE TKSNHQKEIK SSPQEEIKKS NGSDDHHNHQ LLSQNDSYFL AKVVHPFDAQ APGELSLAVD DYVIVRQVAG
401: TGWSEGEYKG KAGWFPSAYV EKQEKAPASK IVESNSKQQ

Arabidopsis Description

SH3P1SH3 domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C865]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.