CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010715.1-P	Field mustard	cytosol	88.15	99.73
CDY12115	Canola	cytosol	95.26	95.04
Zm00001d024355_P001	Maize	cytosol	10.19	82.69
KRH51472	Soybean	cytosol	66.59	75.74
KRH29359	Soybean	endoplasmic reticulum	66.35	75.47
KRH24385	Soybean	endoplasmic reticulum	66.11	75.2
VIT_03s0038g00460.t01	Wine grape	cytosol	64.69	73.58
CDY12114	Canola	cytosol	20.14	71.43
Solyc01g110300.2.1	Tomato	nucleus	61.61	70.65
PGSC0003DMT400008049	Potato	mitochondrion	61.85	70.54
CDX69077	Canola	mitochondrion	61.61	70.46
CDX75452	Canola	mitochondrion	61.61	70.46
CDX76295	Canola	cytosol	61.14	70.3
GSMUA_Achr11P...	Banana	cytosol	61.61	70.08
CDY17473	Canola	mitochondrion	60.66	69.57
GSMUA_Achr5P19940_001	Banana	cytosol	59.48	67.66
GSMUA_Achr8P11720_001	Banana	cytosol	59.24	67.39
KRH60785	Soybean	endoplasmic reticulum	61.85	67.27
GSMUA_Achr11P...	Banana	cytosol	59.0	66.76
EER91379	Sorghum	cytosol	58.06	66.4
TraesCS1A01G177700.1	Wheat	cytosol	57.58	65.85
Os10t0512700-01	Rice	plasma membrane	57.58	65.68
Zm00001d013860_P012	Maize	cytosol	58.29	65.6
TraesCS1B01G202500.1	Wheat	cytosol	57.35	65.58
TraesCS1D01G176200.1	Wheat	cytosol	57.11	65.31
TraesCS2B01G406500.2	Wheat	cytosol	56.16	64.05
TraesCS2D01G386200.1	Wheat	cytosol	55.92	63.78
TraesCS2A01G388400.1	Wheat	cytosol	55.92	63.78
OQU82036	Sorghum	cytosol	55.21	63.32
Zm00001d002810_P001	Maize	plasma membrane	55.21	63.32
Zm00001d032465_P002	Maize	cytosol	57.82	62.4
Os04t0539800-01	Rice	plasma membrane	53.55	61.25
Zm00001d025955_P001	Maize	cytosol, mitochondrion	54.03	60.16
HORVU1Hr1G047180.11	Barley	cytosol	52.84	59.95
HORVU2Hr1G092430.1	Barley	cytosol	55.45	56.52
CDY01515	Canola	cytosol, mitochondrion	42.65	51.28
CDX90424	Canola	mitochondrion	42.42	51.0
CDY27149	Canola	cytosol	40.05	39.03
CDY12418	Canola	cytosol	39.57	38.57
CDY12310	Canola	nucleus	12.32	23.32

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	InterPro:AH/BAR_dom_sf	EnsemblPlants:CDX90304	ProteinID:CDX90304
ProteinID:CDX90304.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00150885001
InterPro:IPR001452	InterPro:IPR027267	PFAM:PF14604	PRINTS:PR00499	PFscan:PS50002	PANTHER:PTHR44109
PANTHER:PTHR44109:SF4	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044
UniParc:UPI0004EDBA6B	SEG:seg	:	:	:	:

Description

BnaA08g16800D

Coordinates

chrLK031862:+:1158664..1161146

Molecular Weight (calculated)

47386.1 Da

IEP (calculated)

6.341

GRAVY (calculated)

-0.562

Length

422 amino acids

Sequence
(BLAST)

001: MEAIRKQASK FREQVARQQQ AVLRQFGGGG YGGSDNVITD EEELHRHQKL EKLYISTRSA KHFQRDIVRG VEGSIVTGSK QVEIGTKLCE DSRRYGSGNT
101: CTSGNTLTRA SLSFANARDQ MEKERGNLLK ALGTQVAEPL RAMVIGAPLV DARHLAQRYE RMRQETESQT IEVSKRQAKV RENPGNPELV MKLEYAEAKL
201: QDLKSNMTIL GKEAASAMAA VEEQQQTQTF QRLITLVEAE RIYHQRILEI IERLEGEMRV EQQRIEGPQT PQVDNITSSP PPSYEEASNE VNASHMHDGT
301: SDAMGYFLGE VMFSYQSDSE FELSLSVGDY VVIREVTSSG WAEGECKGKA GWFPYDYIER RDRVLATKVI ELIVSFIVSS LQSVRDNHDP NRTSSLSLTA
401: SIIYFPNAPL KSSLAVEKLR RA

Best Arabidopsis Sequence Match ( AT4G34660.3 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEVLFPYH GVTDVELSLS TGEYVVVRKV TGSGWAEGEC KGKAGWFPYG
301: YIERRERVLA SKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.