CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59070	Soybean	cytosol	97.99	95.79
VIT_10s0003g02590.t01	Wine grape	cytosol	77.01	77.01
CDY01515	Canola	cytosol, mitochondrion	76.15	75.5
PGSC0003DMT400007954	Potato	cytosol	76.44	75.35
AT4G18060.1	Thale cress	cytosol, mitochondrion	75.86	75.21
Bra012620.1-P	Field mustard	mitochondrion	75.57	74.93
CDX90424	Canola	mitochondrion	75.57	74.93
Solyc02g071330.2.1	Tomato	cytosol	67.24	73.82
GSMUA_Achr9P02630_001	Banana	mitochondrion	60.06	66.56
Os07t0508300-01	Rice	plasma membrane	65.52	65.52
Zm00001d008747_P001	Maize	nucleus	31.32	64.5
Zm00001d006152_P001	Maize	nucleus	27.3	64.19
EER99434	Sorghum	cytosol	63.51	63.51
Zm00001d006461_P001	Maize	mitochondrion	62.64	62.64
TraesCS2D01G231700.1	Wheat	cytosol	61.21	61.74
TraesCS2A01G226200.1	Wheat	cytosol	60.92	61.45
TraesCS2B01G249500.1	Wheat	cytosol	60.63	61.16
KRH29359	Soybean	endoplasmic reticulum	57.18	53.64
KRH24385	Soybean	endoplasmic reticulum	56.61	53.1
KRH51472	Soybean	cytosol	56.32	52.83
HORVU2Hr1G047840.1	Barley	cytosol	20.11	47.95
KRH60785	Soybean	endoplasmic reticulum	52.3	46.91
KRH39714	Soybean	cytosol	45.11	43.37
KRH76411	Soybean	cytosol	44.54	42.82
Zm00001d022555_P001	Maize	cytosol, mitochondrion	48.56	41.42
Zm00001d022556_P001	Maize	cytosol	43.68	40.75
GSMUA_Achr6P29510_001	Banana	cytosol	55.17	37.43

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100820088	Gene3D:2.30.30.40	MapMan:35.1	EMBL:ACUP02004841	InterPro:AH/BAR_dom_sf
ncoils:Coil	EnsemblPlantsGene:GLYMA_08G121300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1KSJ8
InterPro:IPR001452	InterPro:IPR027267	EnsemblPlants:KRH42945	ProteinID:KRH42945	ProteinID:KRH42945.1	PFAM:PF00018
PRINTS:PR00499	PFscan:PS50002	PANTHER:PTHR44109	PANTHER:PTHR44109:SF5	InterPro:SH3-like_dom_sf	InterPro:SH3_domain
SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044	UniParc:UPI0001CAAF89	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:9366886..9372398

Molecular Weight (calculated)

38973.2 Da

IEP (calculated)

7.304

GRAVY (calculated)

-0.607

Length

348 amino acids

Sequence
(BLAST)

001: MDALRKQASK LREQVAKQQQ AVIKQFSSSG YESSDVVVID EVEMQRHHQL EKLYRATRSG KDFQKEIVKA AETFTAIGYK HIETGTKLSE DCCKYGAENN
101: SDNILAKAAS VYGDARKHVE KEHEELNRLL STQVLDPLRQ MINGVPLEDA RHLAQRYSRM RQEAEAQREE IVRRQARVRE APTAEQVAKL HAAEAKMQEL
201: KANMAVLGKE AAAALAAVEA QQQRLTFQRL VAMVEGEKTF HLRVAAILGE IEAEMVSDRQ KKESAPPVGI SENGSEKTMY FLAEATHPFS AESEKELSFS
301: KGDFVVVRKV SPSGWSEGEC NGKAGWFPSA YVEKRQRIPS SNMAGEVY

Best Arabidopsis Sequence Match ( AT4G18060.1 )
(BLAST)

001: MDAFRRQASK LRDQVAKQQL AVIKQFSGTG YESSDVMVID ELEMQRHHQL DKLYRSTRSA KEFQRDIVKA AEAFTTIGLR HIEAGTKLSE DCCRYGNENS
101: QNIDENILAK AAAIYGDARK HVDKEQEDFN KLLASQVLDP LRAMVAGSPL EDARHLAQRY SRMRQEAETH ATEVSRRQAR VREAPIPENV AKLQLAEAKM
201: QELKANMAVL GKEATAALAA VESQQHRLTF QRLVAMVEGE KNYHLRIAAI LSDIEAEMVT EKQHKESAPP AIPTENGSEK TSYFLAEVIH PFSAASEKEL
301: DLDKGDYIVV RKVSQTGWAE GECKGKAGWF PMAYIEKRQR LPTTNFAAEV Y

Arabidopsis Description

SH3P3SH3 domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7W0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.