Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01515 | Canola | cytosol, mitochondrion | 93.73 | 93.73 |
| Bra012620.1-P | Field mustard | mitochondrion | 93.16 | 93.16 |
| CDX90424 | Canola | mitochondrion | 93.16 | 93.16 |
| VIT_10s0003g02590.t01 | Wine grape | cytosol | 76.92 | 77.59 |
| KRH42945 | Soybean | endoplasmic reticulum | 75.21 | 75.86 |
| PGSC0003DMT400007954 | Potato | cytosol | 74.93 | 74.5 |
| Solyc02g071330.2.1 | Tomato | cytosol | 66.38 | 73.5 |
| KRH59070 | Soybean | cytosol | 74.07 | 73.03 |
| GSMUA_Achr9P02630_001 | Banana | mitochondrion | 59.83 | 66.88 |
| Zm00001d008747_P001 | Maize | nucleus | 31.62 | 65.68 |
| Zm00001d006152_P001 | Maize | nucleus | 27.64 | 65.54 |
| Os07t0508300-01 | Rice | plasma membrane | 62.11 | 62.64 |
| EER99434 | Sorghum | cytosol | 60.68 | 61.21 |
| Zm00001d006461_P001 | Maize | mitochondrion | 60.68 | 61.21 |
| TraesCS2D01G231700.1 | Wheat | cytosol | 58.97 | 60.0 |
| TraesCS2A01G226200.1 | Wheat | cytosol | 58.4 | 59.42 |
| TraesCS2B01G249500.1 | Wheat | cytosol | 58.12 | 59.13 |
| AT4G34660.1 | Thale cress | mitochondrion | 52.99 | 50.54 |
| HORVU2Hr1G047840.1 | Barley | cytosol | 19.66 | 47.26 |
| Zm00001d022555_P001 | Maize | cytosol, mitochondrion | 47.58 | 40.93 |
| Zm00001d022556_P001 | Maize | cytosol | 42.45 | 39.95 |
| GSMUA_Achr6P29510_001 | Banana | cytosol | 56.41 | 38.6 |
| AT1G31440.1 | Thale cress | cytosol | 41.88 | 33.49 |
| AT4G39020.1 | Thale cress | cytosol | 14.81 | 30.77 |
Protein Annotations
| Gene3D:1.20.1270.60 | Gene3D:2.30.30.40 | MapMan:35.1 | EntrezGene:827531 | UniProt:A0A178V6H0 | ProteinID:AEE83989.1 |
| EMBL:AF367775 | InterPro:AH/BAR_dom_sf | ArrayExpress:AT4G18060 | EnsemblPlantsGene:AT4G18060 | RefSeq:AT4G18060 | TAIR:AT4G18060 |
| RefSeq:AT4G18060-TAIR-G | EnsemblPlants:AT4G18060.1 | TAIR:AT4G18060.1 | EMBL:AY125505 | EMBL:BT002255 | ProteinID:CAB53647.1 |
| ProteinID:CAB78808.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0030136 | GO:GO:0031410 | InterPro:IPR001452 |
| InterPro:IPR027267 | RefSeq:NP_193540.3 | ProteinID:OAP00553.1 | PFAM:PF14604 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00499 | PFscan:PS50002 |
| PANTHER:PTHR44109 | PANTHER:PTHR44109:SF5 | UniProt:Q8L7W0 | InterPro:SH3-like_dom_sf | InterPro:SH3_domain | SMART:SM00326 |
| SUPFAM:SSF103657 | SUPFAM:SSF50044 | UniParc:UPI00000AC422 | : | : | : |
Description
SH3P3SH3 domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7W0]
Coordinates
chr4:-:10026650..10030033
Molecular Weight (calculated)
39535.9 Da
IEP (calculated)
6.865
GRAVY (calculated)
-0.572
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAFRRQASK LRDQVAKQQL AVIKQFSGTG YESSDVMVID ELEMQRHHQL DKLYRSTRSA KEFQRDIVKA AEAFTTIGLR HIEAGTKLSE DCCRYGNENS
101: QNIDENILAK AAAIYGDARK HVDKEQEDFN KLLASQVLDP LRAMVAGSPL EDARHLAQRY SRMRQEAETH ATEVSRRQAR VREAPIPENV AKLQLAEAKM
201: QELKANMAVL GKEATAALAA VESQQHRLTF QRLVAMVEGE KNYHLRIAAI LSDIEAEMVT EKQHKESAPP AIPTENGSEK TSYFLAEVIH PFSAASEKEL
301: DLDKGDYIVV RKVSQTGWAE GECKGKAGWF PMAYIEKRQR LPTTNFAAEV Y
101: QNIDENILAK AAAIYGDARK HVDKEQEDFN KLLASQVLDP LRAMVAGSPL EDARHLAQRY SRMRQEAETH ATEVSRRQAR VREAPIPENV AKLQLAEAKM
201: QELKANMAVL GKEATAALAA VESQQHRLTF QRLVAMVEGE KNYHLRIAAI LSDIEAEMVT EKQHKESAPP AIPTENGSEK TSYFLAEVIH PFSAASEKEL
301: DLDKGDYIVV RKVSQTGWAE GECKGKAGWF PMAYIEKRQR LPTTNFAAEV Y
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.