Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P02620_001 | Banana | cytosol | 10.65 | 33.96 |
| AT4G34660.1 | Thale cress | mitochondrion | 40.24 | 18.48 |
| AT4G18060.1 | Thale cress | cytosol, mitochondrion | 30.77 | 14.81 |
| AT1G31440.1 | Thale cress | cytosol | 26.63 | 10.25 |
Protein Annotations
| Gene3D:2.30.30.40 | MapMan:35.1 | EntrezGene:830057 | ProteinID:AEE87008.1 | ArrayExpress:AT4G39020 | EnsemblPlantsGene:AT4G39020 |
| RefSeq:AT4G39020 | TAIR:AT4G39020 | RefSeq:AT4G39020-TAIR-G | EnsemblPlants:AT4G39020.1 | TAIR:AT4G39020.1 | Unigene:At.54652 |
| ProteinID:CAB38822.1 | ProteinID:CAB80565.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001452 |
| RefSeq:NP_195613.1 | PFAM:PF00018 | PRINTS:PR00499 | PFscan:PS50002 | PANTHER:PTHR44109 | PANTHER:PTHR44109:SF4 |
| UniProt:Q9SVJ1 | InterPro:SH3-like_dom_sf | InterPro:SH3_domain | SMART:SM00326 | SUPFAM:SSF50044 | UniParc:UPI00000A9CAC |
| SEG:seg | : | : | : | : | : |
Description
SH3 domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9SVJ1]
Coordinates
chr4:+:18182315..18184340
Molecular Weight (calculated)
19452.1 Da
IEP (calculated)
4.395
GRAVY (calculated)
-0.061
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSRYPIGGF AFHRHQFHLL LRHLGIFSQK ERNFLQVDDE GGWIVVPLTT IIVFTKTLMM AECCEECCEQ MEEDAYSEWL REANDGVNAS QMHNGTSDAM
101: GYFLGEVMFP YQADSDFELS LSVGDYVVIR EVVSSVWAEG ECKGNAGWFT YIYIERRDRV FATKVIEVF
101: GYFLGEVMFP YQADSDFELS LSVGDYVVIR EVVSSVWAEG ECKGNAGWFT YIYIERRDRV FATKVIEVF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.