Factsheet for VIT_10s0003g02590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42945	Soybean	endoplasmic reticulum	77.01	77.01
AT4G18060.1	Thale cress	cytosol, mitochondrion	77.59	76.92
CDY01515	Canola	cytosol, mitochondrion	75.86	75.21
Bra012620.1-P	Field mustard	mitochondrion	75.57	74.93
CDX90424	Canola	mitochondrion	75.57	74.93
KRH59070	Soybean	cytosol	76.15	74.44
PGSC0003DMT400007954	Potato	cytosol	75.0	73.94
Solyc02g071330.2.1	Tomato	cytosol	65.52	71.92
GSMUA_Achr9P02630_001	Banana	mitochondrion	61.49	68.15
Zm00001d006152_P001	Maize	nucleus	28.45	66.89
Zm00001d008747_P001	Maize	nucleus	31.03	63.91
Os07t0508300-01	Rice	plasma membrane	63.79	63.79
EER99434	Sorghum	cytosol	63.51	63.51
Zm00001d006461_P001	Maize	mitochondrion	62.07	62.07
TraesCS2D01G231700.1	Wheat	cytosol	60.06	60.58
TraesCS2A01G226200.1	Wheat	cytosol	59.77	60.29
TraesCS2B01G249500.1	Wheat	cytosol	59.48	60.0
VIT_03s0038g00460.t01	Wine grape	cytosol	60.92	57.14
VIT_18s0001g13530.t01	Wine grape	cytosol	54.02	51.09
HORVU2Hr1G047840.1	Barley	cytosol	19.54	46.58
VIT_02s0087g00190.t01	Wine grape	cytosol	47.7	44.74
Zm00001d022556_P001	Maize	cytosol	45.11	42.09
Zm00001d022555_P001	Maize	cytosol, mitochondrion	48.28	41.18
GSMUA_Achr6P29510_001	Banana	cytosol	56.03	38.01
VIT_00s0169g00080.t01	Wine grape	cytosol	10.34	26.67

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100258967	wikigene:100258967	Gene3D:2.30.30.40	MapMan:35.1	InterPro:AH/BAR_dom_sf
ProteinID:CBI30806	ProteinID:CBI30806.3	ncoils:Coil	UniProt:D7TJY4	EMBL:FN595992	GO:GO:0000166
GO:GO:0003674	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:IPR001452	InterPro:IPR027267
EntrezGene:LOC100258967	wikigene:LOC100258967	PFAM:PF14604	PRINTS:PR00499	PFscan:PS50002	PANTHER:PTHR44109
PANTHER:PTHR44109:SF3	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044
TIGR:TC70748	UniParc:UPI00015CCC0A	ArrayExpress:VIT_10s0003g02590	EnsemblPlantsGene:VIT_10s0003g02590	EnsemblPlants:VIT_10s0003g02590.t01	unigene:Vvi.6604
RefSeq:XP_002272365	RefSeq:XP_002272365.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:-:4543811..4571056

Molecular Weight (calculated)

38899.2 Da

IEP (calculated)

8.080

GRAVY (calculated)

-0.581

Length

348 amino acids

Sequence
(BLAST)

001: MDALRKQASK FREQVAKQQQ AVIKQFGGTG YESSDVMVID EVEMQRHQQL EKLYRSTRAG KDFQKDIVRA GEAFTAIGYK QIETGTKLSE DCCRYGAENI
101: NDNILARAAS IYGDGLKHIA KEQEDLNKLL SSQILDPLRA MVTGAPLEDA RHLAQRYSRM RHEAETQAAE VSRRQARLRE APNPENAARL NIAEAKMKEL
201: KANMAVLGKE AAAALAAVEA QQQRLSFQRL VAMVEGERTY HQRIATIFGE VESEMVSEKQ RKESAPPAIP SESHSEKTMY FLAEAMHAFS AASEKELSLN
301: VGDYVVVRKV SHTGWSEGEC KGKAGWFPSE YVAKRQRLPT SNVAAEVY

Best Arabidopsis Sequence Match ( AT4G18060.1 )
(BLAST)

001: MDAFRRQASK LRDQVAKQQL AVIKQFSGTG YESSDVMVID ELEMQRHHQL DKLYRSTRSA KEFQRDIVKA AEAFTTIGLR HIEAGTKLSE DCCRYGNENS
101: QNIDENILAK AAAIYGDARK HVDKEQEDFN KLLASQVLDP LRAMVAGSPL EDARHLAQRY SRMRQEAETH ATEVSRRQAR VREAPIPENV AKLQLAEAKM
201: QELKANMAVL GKEATAALAA VESQQHRLTF QRLVAMVEGE KNYHLRIAAI LSDIEAEMVT EKQHKESAPP AIPTENGSEK TSYFLAEVIH PFSAASEKEL
301: DLDKGDYIVV RKVSQTGWAE GECKGKAGWF PMAYIEKRQR LPTTNFAAEV Y

Arabidopsis Description

SH3P3SH3 domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7W0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.