CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93074
EES01101

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12580.1	EES01101	AT4G11260.1	18065690
AT3G12580.1	EER93074	AT4G17750.1	11807141

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010529_P001	Maize	cytosol	98.0	98.0
Os05t0460000-01	Rice	cytosol, nucleus, plastid	96.76	97.21
EES01731	Sorghum	cytosol	95.69	95.83
KXG26133	Sorghum	cytosol	90.6	95.45
Bra001457.1-P	Field mustard	cytosol	86.29	95.24
CDX73815	Canola	cytosol	95.22	94.79
CDY00784	Canola	cytosol	94.92	94.77
KRH70484	Soybean	cytosol	81.66	94.64
CDY50531	Canola	cytosol	94.76	94.62
Bra038734.1-P	Field mustard	cytosol	94.76	94.62
KRH01631	Soybean	endoplasmic reticulum	94.61	94.61
CDY52661	Canola	cytosol	94.3	94.59
AT3G12580.1	Thale cress	cytosol	94.45	94.31
EES16191	Sorghum	cytosol	93.99	93.99
EER95095	Sorghum	cytosol	92.45	92.45
EER92466	Sorghum	cytosol	91.68	91.26
EER95094	Sorghum	cytosol	59.78	69.53
KXG39675	Sorghum	cytosol	56.09	67.78
KXG39678	Sorghum	cytosol	57.94	67.63
EER95091	Sorghum	cytosol	58.55	67.14
OQU92816	Sorghum	cytosol	43.45	64.98
EER92471	Sorghum	cytosol	57.16	64.86
KXG39677	Sorghum	cytosol	54.7	64.55
OQU92815	Sorghum	cytosol	36.52	62.2
EER95090	Sorghum	cytosol	54.24	61.65
KXG29291	Sorghum	plasma membrane	62.25	59.59
EER93587	Sorghum	endoplasmic reticulum	59.48	57.1
EES01866	Sorghum	endoplasmic reticulum	58.55	56.97
EER91365	Sorghum	mitochondrion	48.38	46.31
EER99104	Sorghum	mitochondrion	47.3	45.28
KXG37805	Sorghum	plastid	46.23	43.99
EES15917	Sorghum	plastid	46.38	42.88

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40	Gene3D:3.90.640.10
EntrezGene:8072550	UniProt:C5YZA1	ncoils:Coil	EnsemblPlants:EES19649	ProteinID:EES19649	ProteinID:EES19649.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf
InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	PFAM:PF00012	PRINTS:PR00301
ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF323	EnsemblPlantsGene:SORBI_3009G163900
SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	unigene:Sbi.18312	UniParc:UPI0001A8956F	RefSeq:XP_002441219.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:52032825..52036139

Molecular Weight (calculated)

71006.3 Da

IEP (calculated)

4.872

GRAVY (calculated)

-0.418

Length

649 amino acids

Sequence
(BLAST)

001: MAKGEGPAIG IDLGTTYSCV GVWQHDRVEI IANDQGNRTT PSYVAFTDTE RLIGDAAKNQ VAMNPTNTVF DAKRLIGRRF SDPSVQSDMK LWPFKVVAGP
101: ADKPMIVVNY KGEEKQFSAE EISSMVLTKM KEIAEAYLGS TIKNAVVTVP AYFNDSQRQA TKDAGVISGL NVMRIINEPT AAAIAYGLDK KATSSGEKNV
201: LIFDLGGGTF DVSLLTIEEG IFEVKATAGD THLGGEDFDN RMVNHFVQEF KRKHKKDISG NPRALRRLRT ACERAKRTLS STAQTTIEID SLYEGIDFYT
301: TITRARFEEL NMDLFRKCME PVEKCLRDAK MDKSSVHDVV LVGGSTRIPK VQQLLQDFFN GKELCKSINP DEAVAYGAAV QAAILSGEGN EKVQDLLLLD
401: VTPLSLGLET AGGVMTVLIP RNTTIPTKKE QVFSTYSDNQ PGVLIQVYEG ERARTKDNNL LGKFELSGIP PAPRGVPQIT VCFDIDANGI LNVSAEDKTT
501: GQKNKITITN DKGRLSKEEI EKMVQEAEKY KAEDEEHKKK VDAKNSLENY AYNMRNTIKD DKIASKLGAD DKKRIEDAID GAISWLDSNQ LAEADEFEDK
601: MKELESICNP IIAKMYQGAG ADMGGAAGMD EDAPAGGSSG AGPKIEEVD

Best Arabidopsis Sequence Match ( AT3G12580.1 )
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD

Arabidopsis Description

MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.