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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 4
  • plastid 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 19658398
nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 19658398 doi
S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG94038
KRH07474
KRH08815
KRH27885
KRH35228
KRH38332
KRH39566
KRH74387
KRH77588

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G12580.1 KRG94038 AT4G11260.1 18065690
AT3G12580.1 KRH08815 AT4G11260.1 18065690
AT3G12580.1 KRH27885 AT4G11260.1 18065690
AT3G12580.1 KRH35228 AT4G11260.1 18065690
AT3G12580.1 KRH38332 AT4G11260.1 18065690
AT3G12580.1 KRH77588 AT4G11260.1 18065690
AT3G12580.1 KRH07474 AT4G17750.1 11807141
AT3G12580.1 KRH39566 AT4G17750.1 11807141
AT3G12580.1 KRH74387 AT4G17750.1 11807141
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH70484 Soybean cytosol 85.52 99.11
HORVU1Hr1G072220.4 Barley cytosol 86.29 95.08
KRH24810 Soybean nucleus 94.92 94.92
Os01t0840100-01 Rice nucleus, plasma membrane, plastid 94.76 94.91
KRH29811 Soybean nucleus 94.76 94.76
EES19649 Sorghum cytosol 94.61 94.61
TraesCS1B01G294300.1 Wheat cytosol, golgi, unclear 94.45 94.6
Bra001457.1-P Field mustard cytosol 85.67 94.56
TraesCS1D01G284000.2 Wheat cytosol, golgi 94.3 94.44
TraesCS1A01G285000.2 Wheat cytosol, golgi 94.14 94.29
Bra038734.1-P Field mustard cytosol 94.3 94.15
CDY52661 Canola cytosol 93.84 94.13
Os05t0460000-01 Rice cytosol, nucleus, plastid 93.68 94.12
CDY00784 Canola cytosol 94.14 94.0
CDX73815 Canola cytosol 94.3 93.86
CDY50531 Canola cytosol 93.99 93.85
AT3G12580.1 Thale cress cytosol 93.53 93.38
Zm00001d010529_P001 Maize cytosol 93.37 93.37
KRH19702 Soybean endoplasmic reticulum 90.91 93.35
Zm00001d042922_P002 Maize cytosol 93.07 93.21
EES01731 Sorghum cytosol 93.07 93.21
KXG26133 Sorghum cytosol 88.44 93.18
HORVU4Hr1G059390.1 Barley cytosol 93.37 93.09
Os03t0276500-01 Rice plasma membrane 93.07 92.92
KRH67530 Soybean endoplasmic reticulum, nucleus 93.22 92.65
TraesCS4B01G206700.1 Wheat cytosol 92.91 92.63
Zm00001d012420_P001 Maize plasma membrane 92.45 92.59
TraesCS4D01G207500.1 Wheat cytosol 92.76 92.47
KRG95806 Soybean nucleus 92.91 92.2
EER95095 Sorghum cytosol 91.99 91.99
TraesCS3D01G352400.2 Wheat cytosol, golgi 91.53 91.81
TraesCS4A01G097900.2 Wheat cytosol 92.6 91.76
TraesCS3D01G351900.1 Wheat cytosol 92.14 91.72
TraesCS3B01G390700.1 Wheat cytosol 92.14 91.72
Zm00001d028630_P005 Maize cytosol, extracellular, nucleus, plasma membrane, plastid 91.68 91.68
TraesCS3B01G390800.1 Wheat cytosol 87.21 91.29
KRH03029 Soybean nucleus 87.06 87.6
KRH72327 Soybean endoplasmic reticulum 86.75 86.35
HORVU3Hr1G086500.3 Barley cytosol, plastid 92.91 85.53
KRH11084 Soybean endoplasmic reticulum 65.18 65.99
KRH01651 Soybean cytosol 61.02 65.78
KRH49659 Soybean endoplasmic reticulum 63.94 65.56
KRH11083 Soybean cytosol, endoplasmic reticulum 59.17 65.31
KRH01610 Soybean cytosol, endoplasmic reticulum 66.26 63.89
KRH01609 Soybean cytosol 65.95 63.6
KRH60086 Soybean endoplasmic reticulum 64.25 62.43
KRH41370 Soybean endoplasmic reticulum 64.1 62.37
KRH60091 Soybean nucleus 64.41 59.63
KRH41372 Soybean endoplasmic reticulum 63.94 58.62
KRH21163 Soybean endoplasmic reticulum 39.6 52.56
KRH70355 Soybean cytosol 65.02 47.31
KRH21710 Soybean endoplasmic reticulum 48.84 47.03
KRH10640 Soybean nucleus 48.84 47.03
KRH42039 Soybean mitochondrion 48.69 46.68
KRH49859 Soybean endoplasmic reticulum, nucleus 48.38 46.38
KRH26303 Soybean cytosol, endoplasmic reticulum 18.95 46.07
KRH26302 Soybean plastid 19.26 45.29
KRH06058 Soybean mitochondrion 48.07 45.28
Protein Annotations
Gene3D:1.20.1270.10EntrezGene:100787543MapMan:19.1.5.1Gene3D:2.60.34.10Gene3D:3.30.30.30Gene3D:3.30.420.40
Gene3D:3.90.640.10UniProt:A0A0R0FH00EMBL:ACUP02011523ncoils:CoilEnsemblPlantsGene:GLYMA_18G289100GO:GO:0000166
GO:GO:0003674GO:GO:0005488GO:GO:0005524InterPro:HSP70_C_sfInterPro:HSP70_peptide-bd_sfInterPro:Heat_shock_70_CS
InterPro:Hsp_70_famInterPro:IPR029047InterPro:IPR029048EnsemblPlants:KRH01631ProteinID:KRH01631ProteinID:KRH01631.1
PFAM:PF00012PRINTS:PR00301ScanProsite:PS00297ScanProsite:PS00329ScanProsite:PS01036PANTHER:PTHR19375
PANTHER:PTHR19375:SF323SUPFAM:SSF100920SUPFAM:SSF100934SUPFAM:SSF53067UniParc:UPI000189D278SEG:seg
Description
hypothetical protein
Coordinates
chr18:+:56874667..56877565
Molecular Weight (calculated)
71236.7 Da
IEP (calculated)
4.835
GRAVY (calculated)
-0.416
Length
649 amino acids
Sequence
(BLAST)
001: MAGKGDGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDASVQSDM KLWPFKVIPG
101: PADKPMIVVN YKGEDKQFSA EEISSMVLMK MREIAEAYLG STVKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKHKKDIN GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGVDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLSD DDKKKIEDAI ESAIQWLDGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GAPDMAGGMD EDVPPSGSGG AGPKIEEVD
Best Arabidopsis Sequence Match ( AT3G12580.1 )
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD
Arabidopsis Description
MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.