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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 4
  • plastid 1
  • mitochondrion 2
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:endoplasmic reticulum, mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH67530 Soybean endoplasmic reticulum, nucleus 98.93 99.08
KRH19702 Soybean endoplasmic reticulum 91.74 94.94
Solyc09g010630.2.1 Tomato extracellular 93.58 94.3
PGSC0003DMT400023039 Potato cytosol, extracellular 93.27 93.99
Os11t0703900-01 Rice extracellular, plasma membrane 93.27 93.99
KRH24810 Soybean nucleus 93.12 93.84
TraesCS4A01G175100.1 Wheat cytosol 79.66 93.7
KRH29811 Soybean nucleus 92.81 93.53
KRH70484 Soybean cytosol 79.66 93.04
KRH01631 Soybean endoplasmic reticulum 92.2 92.91
GSMUA_Achr7P15160_001 Banana cytosol 61.31 92.82
EES16191 Sorghum cytosol 92.05 92.76
Os03t0821100-01 Rice plasma membrane 91.9 92.6
TraesCS4D01G140800.1 Wheat cytosol, nucleus 91.74 92.59
Zm00001d041550_P005 Maize cytosol 91.74 92.45
Zm00001d030725_P003 Maize plasma membrane 91.44 92.14
HORVU5Hr1G113180.1 Barley cytosol 90.06 90.9
TraesCS5D01G492900.2 Wheat cytosol 89.91 90.74
TraesCS5A01G479300.1 Wheat golgi 89.91 90.74
TraesCS5B01G492500.1 Wheat cytosol 89.76 90.59
TraesCS4B01G142400.1 Wheat cytosol 91.59 89.54
KRH03029 Soybean nucleus 87.0 88.22
KRH72327 Soybean endoplasmic reticulum 86.85 87.12
KRH11084 Soybean endoplasmic reticulum 64.98 66.3
KRH01651 Soybean cytosol 60.24 65.45
KRH49659 Soybean endoplasmic reticulum 63.3 65.4
KRH11083 Soybean cytosol, endoplasmic reticulum 58.72 65.31
KRH01609 Soybean cytosol 65.6 63.74
KRH01610 Soybean cytosol, endoplasmic reticulum 65.14 63.3
KRH41370 Soybean endoplasmic reticulum 63.3 62.07
KRH60086 Soybean endoplasmic reticulum 63.0 61.68
KRH60091 Soybean nucleus 63.15 58.92
KRH41372 Soybean endoplasmic reticulum 63.15 58.33
KRH21163 Soybean endoplasmic reticulum 39.76 53.17
KRH70355 Soybean cytosol 64.98 47.65
KRH21710 Soybean endoplasmic reticulum 47.55 46.14
KRH10640 Soybean nucleus 47.4 45.99
KRH49859 Soybean endoplasmic reticulum, nucleus 47.4 45.79
KRH42039 Soybean mitochondrion 47.4 45.79
KRH26302 Soybean plastid 19.27 45.65
KRH06058 Soybean mitochondrion 47.4 44.99
KRH26303 Soybean cytosol, endoplasmic reticulum 18.35 44.94
Protein Annotations
Gene3D:1.20.1270.10EntrezGene:100777767MapMan:19.1.5.1Gene3D:2.60.34.10Gene3D:3.30.30.30Gene3D:3.30.420.40
Gene3D:3.90.640.10UniProt:A0A0R4J626EMBL:ACUP02012138ncoils:CoilEnsemblPlantsGene:GLYMA_19G172200GO:GO:0000166
GO:GO:0003674GO:GO:0005488GO:GO:0005524InterPro:HSP70_C_sfInterPro:HSP70_peptide-bd_sfInterPro:Heat_shock_70_CS
InterPro:Hsp_70_famInterPro:IPR029047InterPro:IPR029048EnsemblPlants:KRG95806ProteinID:KRG95806ProteinID:KRG95806.1
PFAM:PF00012PRINTS:PR00301ScanProsite:PS00297ScanProsite:PS00329ScanProsite:PS01036PANTHER:PTHR19375
PANTHER:PTHR19375:SF308SUPFAM:SSF100920SUPFAM:SSF100934SUPFAM:SSF53067UniParc:UPI0001B63B30SEG:seg
Description
hypothetical protein
Coordinates
chr19:-:43318533..43321461
Molecular Weight (calculated)
71503.9 Da
IEP (calculated)
4.775
GRAVY (calculated)
-0.406
Length
654 amino acids
Sequence
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVGFTDT ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FSDSSVQSDI KLWPFKVIAG
101: AADKPMIVVN YKGEEKQFAA EEISSMVLIK MREIAEAYLG STVKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STVTRARFEE LNMDLFRKCM EPVEKCLRDA KMDKRSVDDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVFE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKED IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTVK DDKIGEKLDP TDKKKIEDAI EQAIQWLDSN QLAEADEFED
601: KMKELESICN PIIAKMYQGG AGPDMGGAGA GAAEDDYAAP SGGSGAGPKI EEVD
Best Arabidopsis Sequence Match ( AT5G02500.1 )
(BLAST)
001: MSGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDSSVQSDM KLWPFKIQAG
101: PADKPMIYVE YKGEEKEFAA EEISSMVLIK MREIAEAYLG VTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKSKKDIT GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQGAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIQ DEKIGEKLPA ADKKKIEDSI EQAIQWLEGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGEAGGPGAS GMDDDAPPAS GGAGPKIEEV D
Arabidopsis Description
MED37EProbable mediator of RNA polymerase II transcription subunit 37e [Source:UniProtKB/Swiss-Prot;Acc:P22953]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.