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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 4
  • plastid 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
extracellular: 22364583
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400023039 Potato cytosol, extracellular 99.69 99.69
Solyc10g086410.2.1 Tomato cytosol, endoplasmic reticulum, extracellular, nucleus, unclear 95.38 96.12
Os11t0703900-01 Rice extracellular, plasma membrane 95.22 95.22
VIT_06s0004g04510.t01 Wine grape cytosol, extracellular 95.07 95.22
VIT_13s0019g01430.t01 Wine grape cytosol 94.61 94.46
TraesCS4A01G175100.1 Wheat cytosol 80.74 94.24
KRH19702 Soybean endoplasmic reticulum 91.68 94.15
Os03t0821100-01 Rice plasma membrane 93.84 93.84
EES16191 Sorghum cytosol 93.68 93.68
KRG95806 Soybean nucleus 94.3 93.58
KRH67530 Soybean endoplasmic reticulum, nucleus 94.14 93.57
Zm00001d041550_P005 Maize cytosol 93.53 93.53
Zm00001d030725_P003 Maize plasma membrane 93.22 93.22
TraesCS4D01G140800.1 Wheat cytosol, nucleus 92.91 93.06
Solyc06g076020.2.1 Tomato cytosol, nucleus, plastid, unclear 92.76 92.9
GSMUA_Achr7P15160_001 Banana cytosol 61.79 92.82
HORVU5Hr1G113180.1 Barley cytosol 91.99 92.13
TraesCS5D01G492900.2 Wheat cytosol 91.83 91.98
TraesCS5A01G479300.1 Wheat golgi 91.83 91.98
TraesCS5B01G492500.1 Wheat cytosol 91.68 91.82
Solyc04g011440.2.1 Tomato cytosol, extracellular, nucleus, plastid, unclear 91.53 91.24
Solyc11g066100.1.1 Tomato cytosol, unclear 91.22 90.52
TraesCS4B01G142400.1 Wheat cytosol 92.76 89.99
Solyc11g066060.1.1 Tomato extracellular, nucleus, unclear 93.37 86.82
Solyc03g117630.1.1 Tomato cytosol 85.36 84.71
Solyc07g005820.2.1 Tomato cytosol 82.59 81.96
Solyc08g082820.2.1 Tomato extracellular 63.79 62.16
Solyc03g082920.2.1 Tomato nucleus, plastid 63.17 61.47
Solyc06g052050.2.1 Tomato endoplasmic reticulum, nucleus, unclear 58.4 61.23
Solyc01g099660.2.1 Tomato extracellular 60.4 58.59
Solyc01g106260.2.1 Tomato plastid 46.84 45.37
Solyc01g106210.2.1 Tomato plastid 47.0 44.79
Solyc11g020040.1.1 Tomato plastid 47.0 44.08
Solyc01g103450.2.1 Tomato plastid 47.15 43.53
Protein Annotations
Gene3D:1.20.1270.10MapMan:19.1.5.1Gene3D:2.60.34.10Gene3D:3.30.30.30Gene3D:3.30.420.40Gene3D:3.90.640.10
ncoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524InterPro:HSP70_C_sf
InterPro:HSP70_peptide-bd_sfInterPro:Heat_shock_70_CSInterPro:Hsp_70_famInterPro:IPR029047InterPro:IPR029048UniProt:K4CR90
PFAM:PF00012PRINTS:PR00301ScanProsite:PS00297ScanProsite:PS00329ScanProsite:PS01036PANTHER:PTHR19375
PANTHER:PTHR19375:SF323SUPFAM:SSF100920SUPFAM:SSF100934SUPFAM:SSF53067EnsemblPlantsGene:Solyc09g010630.2EnsemblPlants:Solyc09g010630.2.1
UniParc:UPI000276AD1FSEG:seg::::
Description
No Description!
Coordinates
chr9:+:3965253..3968837
Molecular Weight (calculated)
71228.7 Da
IEP (calculated)
4.878
GRAVY (calculated)
-0.421
Length
649 amino acids
Sequence
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVGFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FSDATVQSDI KHWPFKVIAG
101: PGDKPMIVVN YKGEEKQFAA EEISSMVLIK MREIAEAFLG STVKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKNSIHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKSEDEDHKK KVEAKNALEN YAYNMRNTIK DEKIASKLPE ADRKKIEEAI EQAIQWLDAN QLAESDEFED
601: KMKELESICN PIIAKMYQGA GGDMGADMGD DGPAPSGGSG AGPKIEEVD
Best Arabidopsis Sequence Match ( AT3G12580.1 )
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD
Arabidopsis Description
MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.