Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
22364583
plastid: 26371478 unclear: 26455813 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400023039 | Potato | cytosol, extracellular | 99.69 | 99.69 |
Solyc10g086410.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, nucleus, unclear | 95.38 | 96.12 |
Os11t0703900-01 | Rice | extracellular, plasma membrane | 95.22 | 95.22 |
VIT_06s0004g04510.t01 | Wine grape | cytosol, extracellular | 95.07 | 95.22 |
VIT_13s0019g01430.t01 | Wine grape | cytosol | 94.61 | 94.46 |
TraesCS4A01G175100.1 | Wheat | cytosol | 80.74 | 94.24 |
KRH19702 | Soybean | endoplasmic reticulum | 91.68 | 94.15 |
Os03t0821100-01 | Rice | plasma membrane | 93.84 | 93.84 |
EES16191 | Sorghum | cytosol | 93.68 | 93.68 |
KRG95806 | Soybean | nucleus | 94.3 | 93.58 |
KRH67530 | Soybean | endoplasmic reticulum, nucleus | 94.14 | 93.57 |
Zm00001d041550_P005 | Maize | cytosol | 93.53 | 93.53 |
Zm00001d030725_P003 | Maize | plasma membrane | 93.22 | 93.22 |
TraesCS4D01G140800.1 | Wheat | cytosol, nucleus | 92.91 | 93.06 |
Solyc06g076020.2.1 | Tomato | cytosol, nucleus, plastid, unclear | 92.76 | 92.9 |
GSMUA_Achr7P15160_001 | Banana | cytosol | 61.79 | 92.82 |
HORVU5Hr1G113180.1 | Barley | cytosol | 91.99 | 92.13 |
TraesCS5D01G492900.2 | Wheat | cytosol | 91.83 | 91.98 |
TraesCS5A01G479300.1 | Wheat | golgi | 91.83 | 91.98 |
TraesCS5B01G492500.1 | Wheat | cytosol | 91.68 | 91.82 |
Solyc04g011440.2.1 | Tomato | cytosol, extracellular, nucleus, plastid, unclear | 91.53 | 91.24 |
Solyc11g066100.1.1 | Tomato | cytosol, unclear | 91.22 | 90.52 |
TraesCS4B01G142400.1 | Wheat | cytosol | 92.76 | 89.99 |
Solyc11g066060.1.1 | Tomato | extracellular, nucleus, unclear | 93.37 | 86.82 |
Solyc03g117630.1.1 | Tomato | cytosol | 85.36 | 84.71 |
Solyc07g005820.2.1 | Tomato | cytosol | 82.59 | 81.96 |
Solyc08g082820.2.1 | Tomato | extracellular | 63.79 | 62.16 |
Solyc03g082920.2.1 | Tomato | nucleus, plastid | 63.17 | 61.47 |
Solyc06g052050.2.1 | Tomato | endoplasmic reticulum, nucleus, unclear | 58.4 | 61.23 |
Solyc01g099660.2.1 | Tomato | extracellular | 60.4 | 58.59 |
Solyc01g106260.2.1 | Tomato | plastid | 46.84 | 45.37 |
Solyc01g106210.2.1 | Tomato | plastid | 47.0 | 44.79 |
Solyc11g020040.1.1 | Tomato | plastid | 47.0 | 44.08 |
Solyc01g103450.2.1 | Tomato | plastid | 47.15 | 43.53 |
Protein Annotations
Gene3D:1.20.1270.10 | MapMan:19.1.5.1 | Gene3D:2.60.34.10 | Gene3D:3.30.30.30 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 |
ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:HSP70_C_sf |
InterPro:HSP70_peptide-bd_sf | InterPro:Heat_shock_70_CS | InterPro:Hsp_70_fam | InterPro:IPR029047 | InterPro:IPR029048 | UniProt:K4CR90 |
PFAM:PF00012 | PRINTS:PR00301 | ScanProsite:PS00297 | ScanProsite:PS00329 | ScanProsite:PS01036 | PANTHER:PTHR19375 |
PANTHER:PTHR19375:SF323 | SUPFAM:SSF100920 | SUPFAM:SSF100934 | SUPFAM:SSF53067 | EnsemblPlantsGene:Solyc09g010630.2 | EnsemblPlants:Solyc09g010630.2.1 |
UniParc:UPI000276AD1F | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr9:+:3965253..3968837
Molecular Weight (calculated)
71228.7 Da
IEP (calculated)
4.878
GRAVY (calculated)
-0.421
Length
649 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVGFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FSDATVQSDI KHWPFKVIAG
101: PGDKPMIVVN YKGEEKQFAA EEISSMVLIK MREIAEAFLG STVKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKNSIHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKSEDEDHKK KVEAKNALEN YAYNMRNTIK DEKIASKLPE ADRKKIEEAI EQAIQWLDAN QLAESDEFED
601: KMKELESICN PIIAKMYQGA GGDMGADMGD DGPAPSGGSG AGPKIEEVD
101: PGDKPMIVVN YKGEEKQFAA EEISSMVLIK MREIAEAFLG STVKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKNSIHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKSEDEDHKK KVEAKNALEN YAYNMRNTIK DEKIASKLPE ADRKKIEEAI EQAIQWLDAN QLAESDEFED
601: KMKELESICN PIIAKMYQGA GGDMGADMGD DGPAPSGGSG AGPKIEEVD
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD
Arabidopsis Description
MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.