Factsheet for Solyc11g020040.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 9

Predictors

GFP

MS/MS

Papers

extracellular: 22892874
plastid: 22908117
plastid: 28183294

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34275	Canola	cytosol	77.02	85.28
CDY08914	Canola	cytosol	76.45	85.19
CDY24832	Canola	cytosol	76.88	85.12
CDY11007	Canola	cytosol	76.3	84.89
Bra002461.1-P	Field mustard	cytosol	63.73	83.05
Solyc01g103450.2.1	Tomato	plastid	82.66	81.37
Bra013786.1-P	Field mustard	plastid	81.94	79.75
CDX92631	Canola	plastid	81.21	79.38
CDY03462	Canola	plastid	81.65	79.35
Bra010498.1-P	Field mustard	plastid	81.94	79.08
Bra019231.1-P	Field mustard	plastid	81.07	79.01
AT5G49910.1	Thale cress	plastid	81.94	78.97
AT4G24280.1	Thale cress	plastid	81.94	78.97
CDY03461	Canola	plastid	75.14	73.14
CDY03459	Canola	cytosol	63.15	66.01
Solyc01g106260.2.1	Tomato	plastid	49.71	51.34
Solyc01g106210.2.1	Tomato	plastid	49.71	50.51
Solyc08g082820.2.1	Tomato	extracellular	46.1	47.9
Solyc03g082920.2.1	Tomato	nucleus, plastid	45.52	47.23
Solyc06g076020.2.1	Tomato	cytosol, nucleus, plastid, unclear	44.22	47.22
Solyc10g086410.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus, unclear	43.93	47.2
Solyc09g010630.2.1	Tomato	extracellular	44.08	47.0
Solyc06g052050.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	41.91	46.85
Solyc04g011440.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	43.93	46.7
Solyc07g005820.2.1	Tomato	cytosol	44.08	46.64
Solyc11g066100.1.1	Tomato	cytosol, unclear	43.93	46.48
Solyc01g099660.2.1	Tomato	extracellular	43.93	45.44
Solyc03g117630.1.1	Tomato	cytosol	42.92	45.41
Solyc11g066060.1.1	Tomato	extracellular, nucleus, unclear	44.08	43.7

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.4.1	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Chaperone_DnaK
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf
InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	UniProt:K4D6V7	HAMAP:MF_00332
PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	PANTHER:PTHR19375	PANTHER:PTHR19375:SF332
SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	EnsemblPlantsGene:Solyc11g020040.1	EnsemblPlants:Solyc11g020040.1.1	TIGRFAMs:TIGR02350
UniParc:UPI000276938F	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:10015582..10019521

Molecular Weight (calculated)

74497.3 Da

IEP (calculated)

5.124

GRAVY (calculated)

-0.356

Length

692 amino acids

Sequence
(BLAST)

001: MASSATHQVK IPFSGHKLDN RTPFSGGRIS FASRKKCYSD KAVRQRFRPM KVVNEKVVGI DLGTTNSAVA VMEGGKPTIV TNAEGQRTTP SVVAYTKNGD
101: RLVGQIAKRQ SVVNPENTFF SVKRFIGRKM AEVDEESKQV SYRVMKDENG NVKLECPAIG KQFAPEEISA QVLRKLVDDA SKFLNDKVAK AVVTVPAYFN
201: DSQRTATKDA GRIAGLDVLR IINEPTAASL AYGFEKKSNE TILVFDLGGG TFDVSVLEVG DGVFEVLSTS GDTHLGGDDF DKRIVDWLAD TFRKEEGIEL
301: LKDKQALQRL TEAAEKAKIE LSTLTQTNIS LPFITATADG PKHIDTTFTR AKFEELCSDL LDRLKTPVET ALKDASLSFK DIDEVVLVGG STRIPAVQNL
401: VRKMTGKEPN VSVNPDEVVA LGASVQAGIL AGDVSDIVLL DVTPLSLGLE TLGGVMTKII PRNTTLPTSK SEVFSTAADG QTSVEINVLQ GEREFVKDNK
501: SIGRFRLDGI PPAPRGVPQI EVKFDIDTNG ILSVTATDKG TGKKQDITIT GASTLPKDEV DRMVQEAEKF AREDKEKREA IDAKNQAESV VYQTEKQLKE
601: LGDKVPADVK NKVESKLKEL KDAISGDSTQ TIKVAMAALN QEVMQLGQSL YSQPGPAGSG PSPGAGTTGS SGSTGKDDGD GEVIDADFSE SN

Best Arabidopsis Sequence Match ( AT5G49910.1 )
(BLAST)

001: MASSAAQIHI LGGIGFPTSS SSSSTKNLDN KTNSIPRSVF FGNRTSPFTT PTSAFLRMGR RNNNASRYTV GPVRVVNEKV VGIDLGTTNS AVAAMEGGKP
101: TIVTNAEGQR TTPSVVAYTK SKDRLVGQIA KRQAVVNPEN TFFSVKRFIG RRMNEVAEES KQVSYRVIKD ENGNVKLDCP AIGKQFAAEE ISAQVLRKLV
201: DDASRFLNDK VTKAVITVPA YFNDSQRTAT KDAGRIAGLE VLRIINEPTA ASLAYGFERK SNETILVFDL GGGTFDVSVL EVGDGVFEVL STSGDTHLGG
301: DDFDKRVVDW LASTFKKDEG IDLLKDKQAL QRLTEAAEKA KIELSSLTQT NMSLPFITAT ADGPKHIETT LTRGKFEELC SDLLDRVRTP VENSLRDAKL
401: SFKDIDEVIL VGGSTRIPAV QDLVRKLTGK EPNVSVNPDE VVALGAAVQA GVLSGDVSDI VLLDVTPLSL GLETLGGVMT KIIPRNTTLP TSKSEVFSTA
501: ADGQTSVEIN VLQGEREFVR DNKSIGSFRL DGIPPAPRGV PQIEVKFDID ANGILSVSAS DKGTGKKQDI TITGASTLPK DEVDTMVQEA ERFAKEDKEK
601: RDAIDTKNQA DSVVYQTEKQ LKELGEKIPG PVKEKVEAKL QELKEKIASG STQEIKDTMA ALNQEVMQIG QSLYNQPQPG GADSPPGGEA SSSSDTSSSA
701: KGGDNGGDVI DADFTDSN

Arabidopsis Description

HSP70-7Heat shock 70 kDa protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LTX9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.