Factsheet for Solyc01g106260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008101	Potato	mitochondrion	98.66	98.07
Solyc01g106210.2.1	Tomato	plastid	93.58	92.07
KRH42039	Soybean	mitochondrion	86.87	85.97
KRH21710	Soybean	endoplasmic reticulum	86.42	85.91
KRH10640	Soybean	nucleus	86.42	85.91
VIT_03s0097g00530.t01	Wine grape	mitochondrion	87.01	85.86
KRH49859	Soybean	endoplasmic reticulum, nucleus	86.72	85.82
Os03t0113700-01	Rice	mitochondrion	83.73	82.99
GSMUA_Achr4P19830_001	Banana	mitochondrion	84.03	82.67
Zm00001d013842_P003	Maize	mitochondrion	83.43	82.45
Zm00001d000295_P001	Maize	mitochondrion, plasma membrane	83.28	82.3
EER91365	Sorghum	mitochondrion	82.99	82.01
CDY56552	Canola	mitochondrion	83.13	81.79
CDX81132	Canola	mitochondrion	83.13	81.79
Os02t0774300-01	Rice	mitochondrion	82.84	81.74
AT5G09590.1	Thale cress	mitochondrion	83.13	81.67
Bra028628.1-P	Field mustard	mitochondrion	82.84	81.62
Bra006027.1-P	Field mustard	mitochondrion	82.84	81.5
CDX85810	Canola	mitochondrion	82.69	81.47
TraesCSU01G116400.1	Wheat	mitochondrion	81.49	81.25
TraesCS2D01G575200.1	Wheat	mitochondrion, plastid	81.64	81.04
TraesCS3A01G305100.3	Wheat	mitochondrion	82.54	80.85
TraesCS3D01G296700.1	Wheat	golgi	82.39	80.82
TraesCS3B01G331400.4	Wheat	mitochondrion	82.24	80.56
TraesCS1A01G295600.1	Wheat	mitochondrion	81.94	80.38
TraesCS4B01G397600.1	Wheat	mitochondrion	81.04	80.21
HORVU4Hr1G089090.8	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	80.45	79.62
HORVU0Hr1G006930.3	Barley	cytosol	56.57	79.12
HORVU3Hr1G073230.9	Barley	endoplasmic reticulum, golgi	81.34	78.08
CDY44807	Canola	mitochondrion	81.49	69.11
Solyc11g020040.1.1	Tomato	plastid	51.34	49.71
Solyc01g103450.2.1	Tomato	plastid	51.64	49.22
Solyc06g052050.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	45.37	49.11
Solyc03g082920.2.1	Tomato	nucleus, plastid	48.51	48.73
Solyc08g082820.2.1	Tomato	extracellular	48.21	48.5
Solyc04g011440.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	46.27	47.62
Solyc03g117630.1.1	Tomato	cytosol	46.27	47.4
Solyc10g086410.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus, unclear	45.37	47.2
Solyc11g066100.1.1	Tomato	cytosol, unclear	45.97	47.09
Solyc06g076020.2.1	Tomato	cytosol, nucleus, plastid, unclear	45.52	47.07
Solyc09g010630.2.1	Tomato	extracellular	45.37	46.84
Solyc07g005820.2.1	Tomato	cytosol	45.52	46.64
Solyc01g099660.2.1	Tomato	extracellular	46.42	46.49
Solyc11g066060.1.1	Tomato	extracellular, nucleus, unclear	45.52	43.7

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.3.1	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:7.11.2.2.5
InterPro:Chaperone_DnaK	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HSP70_C_sf
InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	UniProt:K4B2J4
HAMAP:MF_00332	PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036
PANTHER:PTHR19375	PANTHER:PTHR19375:SF333	SUPFAM:SSF100920	SUPFAM:SSF53067	EnsemblPlantsGene:Solyc01g106260.2	EnsemblPlants:Solyc01g106260.2.1
TIGRFAMs:TIGR02350	UniParc:UPI00027676E5	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:94215968..94220340

Molecular Weight (calculated)

71880.7 Da

IEP (calculated)

6.099

GRAVY (calculated)

-0.314

Length

670 amino acids

Sequence
(BLAST)

001: MTSAGLLLRR SAHKIFASNT KPSWCTSHFG AKWAGLARPF SSKPAGNEII GIDLGTTNSC VAVMEGKNPK VIENAEGART TPSVVAFNQK GERLVGSPAK
101: RQAVTNPANT LSGTKRLIGR RFDDPQTQKE MKMVPYKIVR GSNGDAWLEA NGQQYSPSQI GAFVLTKMKE TAEAYLGKSI SKAVVTVPAY FNDAQRQATK
201: DAGRIAGLDV QRIINEPTAA ALSYGMNNKE GLVAVFDLGG GTFDVSILEI SNGVFEVKAT NGDTFLGGED FDNALLEFLV SEFKRTEGID LSKDKLALQR
301: LREAAEKAKI ELSSTSQTDI NLPFITADAS GAKHLNITLT RSKFETLVNH LIERTRNPCK NCLKDAGVSL KDVDEVLLVG GMTRVPKVQE IVSEIFGKSP
401: SKGVNPDEAV AMGAALQGGI LGGNVKELLL LDVTPLSLGI ETLGGIFTRL INRNTTIPTK KSQVFSTAAD NQTQVGIKVL QGEREMASDN KVLGEFELVG
501: LPPAPRGMPQ IEVMFDIDAN GMVTVSAKDK ATGKEQQISI RSSGGLSEDE INKMVREAEM HAQKDQERKT LIDIRNSADT TIYSIEKSLN EYRDKVPAEV
601: VTEIETAVSD LRAAMGAENI DDIKLKLDAA NKAVSKIGEH MTGGGSGGAS SGSQGGDQSP PEAEYEEVKK

Best Arabidopsis Sequence Match ( AT5G09590.1 )
(BLAST)

001: MATAALLRSI RRREVVSSPF SAYRCLSSSG KASLNSSYLG QNFRSFSRAF SSKPAGNDVI GIDLGTTNSC VAVMEGKNPK VIENAEGART TPSVVAFNTK
101: GELLVGTPAK RQAVTNPTNT VSGTKRLIGR KFDDPQTQKE MKMVPYKIVR APNGDAWVEA NGQQYSPSQI GAFILTKMKE TAEAYLGKSV TKAVVTVPAY
201: FNDAQRQATK DAGRIAGLDV ERIINEPTAA ALSYGMTNKE GLIAVFDLGG GTFDVSVLEI SNGVFEVKAT NGDTFLGGED FDNALLDFLV NEFKTTEGID
301: LAKDRLALQR LREAAEKAKI ELSSTSQTEI NLPFITADAS GAKHFNITLT RSRFETLVNH LIERTRDPCK NCLKDAGISA KEVDEVLLVG GMTRVPKVQS
401: IVAEIFGKSP SKGVNPDEAV AMGAALQGGI LRGDVKELLL LDVTPLSLGI ETLGGVFTRL ITRNTTIPTK KSQVFSTAAD NQTQVGIRVL QGEREMATDN
501: KLLGEFDLVG IPPSPRGVPQ IEVTFDIDAN GIVTVSAKDK TTGKVQQITI RSSGGLSEDD IQKMVREAEL HAQKDKERKE LIDTKNTADT TIYSIEKSLG
601: EYREKIPSEI AKEIEDAVAD LRSASSGDDL NEIKAKIEAA NKAVSKIGEH MSGGSGGGSA PGGGSEGGSD QAPEAEYEEV KK

Arabidopsis Description

HSP70-10Heat shock 70 kDa protein 10, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LDZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.