Factsheet for Solyc03g082920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

cytosol 1
endoplasmic reticulum 9
extracellular 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	cytosol
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

plastid: 20363867
plastid: 22908117
nucleus: 25464976
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047710	Potato	endoplasmic reticulum	96.55	96.41
Solyc08g082820.2.1	Tomato	extracellular	91.75	91.89
KRH60086	Soybean	endoplasmic reticulum	91.6	91.47
KRH41370	Soybean	endoplasmic reticulum	91.3	91.3
VIT_02s0025g02140.t01	Wine grape	endoplasmic reticulum	91.15	91.15
GSMUA_Achr9P23710_001	Banana	endoplasmic reticulum	82.31	90.0
Solyc06g052050.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	83.51	89.98
VIT_16s0098g01580.t01	Wine grape	endoplasmic reticulum	89.51	89.51
GSMUA_Achr3P27250_001	Banana	endoplasmic reticulum	80.36	89.18
TraesCS6D01G049100.1	Wheat	golgi	88.76	89.02
TraesCS6B01G058300.1	Wheat	endoplasmic reticulum	88.76	89.02
TraesCS6A01G042600.1	Wheat	golgi	88.76	89.02
Zm00001d014993_P001	Maize	endoplasmic reticulum	88.31	88.84
Zm00001d054043_P007	Maize	endoplasmic reticulum	88.16	88.69
Os02t0115900-02	Rice	plasma membrane	88.31	88.57
KRH60091	Soybean	nucleus	91.3	86.88
KRH41372	Soybean	endoplasmic reticulum	90.7	85.45
KXG29291	Sorghum	plasma membrane	85.61	84.22
GSMUA_Achr4P11940_001	Banana	cytosol	88.76	81.99
Solyc01g099660.2.1	Tomato	extracellular	75.71	75.49
Solyc06g076020.2.1	Tomato	cytosol, nucleus, plastid, unclear	62.07	63.89
Solyc10g086410.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus, unclear	61.62	63.82
Solyc04g011440.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	62.07	63.59
Solyc11g066100.1.1	Tomato	cytosol, unclear	62.22	63.46
Solyc09g010630.2.1	Tomato	extracellular	61.47	63.17
Solyc03g117630.1.1	Tomato	cytosol	61.47	62.69
Solyc07g005820.2.1	Tomato	cytosol	60.72	61.93
GSMUA_Achr5P10770_001	Banana	cytosol	68.07	61.52
Solyc11g066060.1.1	Tomato	extracellular, nucleus, unclear	61.77	59.03
Solyc01g106260.2.1	Tomato	plastid	48.73	48.51
Solyc01g106210.2.1	Tomato	plastid	49.03	48.02
Solyc11g020040.1.1	Tomato	plastid	47.23	45.52
Solyc01g103450.2.1	Tomato	plastid	46.33	43.95

Protein Annotations

Gene3D:1.20.1270.10	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf
InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	UniProt:K4BI68	PFAM:PF00012
PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF317
SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc03g082920.2	EnsemblPlants:Solyc03g082920.2.1
TMHMM:TMhelix	UniParc:UPI0002768765	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:52794869..52798836

Molecular Weight (calculated)

73461.3 Da

IEP (calculated)

4.804

GRAVY (calculated)

-0.434

Length

667 amino acids

Sequence
(BLAST)

001: MKSCHLYFAL IGLFGLSTGS LFAFSIAKEE ATKLGTVIGI DLGTTYSCVG VYKNGHVEII ANDQGNRITP SWVAFTDGER LIGEAAKNQA AVNPERTVFD
101: VKRLIGRKFE DKEVQRDMKL VPYKIVNKDG KPYIQVKIKD GETKVFSPEE ISAMILVKMK ETAEAFLGKT IKDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSI LTIDNGVFEV LATNGDTHLG GEDFDQRVME YFIKLIKKKH GKDISKDNKA LGKLRREAER
301: AKRALSSQHQ VRVEIESLFD GVDFSEPLTR ARFEELNNDL FRKTMTPVKK AMEDAGLAKN QIDEIVLVGG STRIPKVQQL LKDYFDGKEP SKGVNPDEAV
401: AYGAAVQGGI LSGEGGDETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVT ISVFEGERSM VKDCRLLGKF DLTGIPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKASGKSE KITITNDKGR LSQEEIERMV KEAEEFAEED KKVKERVDAR NSLETYVYNM RNQINDKDKL ADKLESDEKE
601: KIETATKEAL EWLDDNQSAE KEDYEEKLKE VEAVCNPVIT AVYQRSGGAP GGASEDSSED DDSHDEL

Best Arabidopsis Sequence Match ( AT5G42020.1 )
(BLAST)

001: MARSFGANST VVLAIIFFGC LFAFSTAKEE ATKLGSVIGI DLGTTYSCVG VYKNGHVEII ANDQGNRITP SWVGFTDSER LIGEAAKNQA AVNPERTVFD
101: VKRLIGRKFE DKEVQKDRKL VPYQIVNKDG KPYIQVKIKD GETKVFSPEE ISAMILTKMK ETAEAYLGKK IKDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSV LTIDNGVFEV LSTNGDTHLG GEDFDHRIME YFIKLIKKKH QKDISKDNKA LGKLRRECER
301: AKRALSSQHQ VRVEIESLFD GVDLSEPLTR ARFEELNNDL FRKTMGPVKK AMDDAGLQKS QIDEIVLVGG STRIPKVQQL LKDFFEGKEP NKGVNPDEAV
401: AYGAAVQGGI LSGEGGDETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVS IQVFEGERSL TKDCRLLGKF DLTGVPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKASGKSE KITITNEKGR LSQEEIDRMV KEAEEFAEED KKVKEKIDAR NALETYVYNM KNQVSDKDKL ADKLEGDEKE
601: KIEAATKEAL EWLDENQNSE KEEYDEKLKE VEAVCNPIIT AVYQRSGGAP GAGGESSTEE EDESHDEL

Arabidopsis Description

BIPHeat shock protein 70 (Hsp 70) family protein [Source:TAIR;Acc:AT5G42020]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.