Factsheet for Solyc01g106210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
plastid: 26371478
unclear: 26455813
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027703	Potato	mitochondrion	98.53	99.11
Solyc01g106260.2.1	Tomato	plastid	92.07	93.58
VIT_03s0097g00530.t01	Wine grape	mitochondrion	88.4	88.66
KRH42039	Soybean	mitochondrion	87.96	88.48
KRH10640	Soybean	nucleus	87.52	88.43
KRH49859	Soybean	endoplasmic reticulum, nucleus	87.81	88.33
KRH21710	Soybean	endoplasmic reticulum	87.37	88.28
Zm00001d013842_P003	Maize	mitochondrion	83.85	84.22
Os03t0113700-01	Rice	mitochondrion	83.55	84.17
AT5G09590.1	Thale cress	mitochondrion	84.14	84.02
GSMUA_Achr4P19830_001	Banana	mitochondrion	83.99	83.99
EER91365	Sorghum	mitochondrion	83.55	83.92
Zm00001d000295_P001	Maize	mitochondrion, plasma membrane	83.41	83.78
Bra006027.1-P	Field mustard	mitochondrion	83.41	83.41
CDY56552	Canola	mitochondrion	83.41	83.41
Bra028628.1-P	Field mustard	mitochondrion	83.26	83.38
CDX85810	Canola	mitochondrion	83.26	83.38
CDX81132	Canola	mitochondrion	83.26	83.26
Os02t0774300-01	Rice	mitochondrion	82.82	83.06
TraesCSU01G116400.1	Wheat	mitochondrion	81.5	82.59
TraesCS2D01G575200.1	Wheat	mitochondrion, plastid	81.79	82.52
TraesCS3A01G305100.3	Wheat	mitochondrion	82.38	82.02
TraesCS3D01G296700.1	Wheat	golgi	82.09	81.84
TraesCS1A01G295600.1	Wheat	mitochondrion	81.94	81.7
TraesCS4B01G397600.1	Wheat	mitochondrion	81.2	81.68
TraesCS3B01G331400.4	Wheat	mitochondrion	81.94	81.58
HORVU4Hr1G089090.8	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	80.32	80.8
HORVU0Hr1G006930.3	Barley	cytosol	56.09	79.75
HORVU3Hr1G073230.9	Barley	endoplasmic reticulum, golgi	80.91	78.94
CDY44807	Canola	mitochondrion	82.38	71.01
Solyc11g020040.1.1	Tomato	plastid	50.51	49.71
Solyc06g052050.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	45.08	49.6
Solyc08g082820.2.1	Tomato	extracellular	48.02	49.1
Solyc03g082920.2.1	Tomato	nucleus, plastid	48.02	49.03
Solyc01g103450.2.1	Tomato	plastid	49.93	48.36
Solyc04g011440.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	45.67	47.77
Solyc10g086410.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus, unclear	44.93	47.52
Solyc11g066100.1.1	Tomato	cytosol, unclear	45.52	47.4
Solyc03g117630.1.1	Tomato	cytosol	45.23	47.09
Solyc01g099660.2.1	Tomato	extracellular	46.26	47.09
Solyc06g076020.2.1	Tomato	cytosol, nucleus, plastid, unclear	44.79	47.07
Solyc09g010630.2.1	Tomato	extracellular	44.79	47.0
Solyc07g005820.2.1	Tomato	cytosol	44.93	46.79
Solyc11g066060.1.1	Tomato	extracellular, nucleus, unclear	45.08	43.98

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.3.1	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:7.11.2.2.5
InterPro:Chaperone_DnaK	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HSP70_C_sf
InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	UniProt:K4B2I9
HAMAP:MF_00332	PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036
PANTHER:PTHR19375	PANTHER:PTHR19375:SF333	SUPFAM:SSF100920	SUPFAM:SSF53067	EnsemblPlantsGene:Solyc01g106210.2	EnsemblPlants:Solyc01g106210.2.1
TIGRFAMs:TIGR02350	UniParc:UPI000276753A	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:94157485..94161397

Molecular Weight (calculated)

72974.0 Da

IEP (calculated)

5.596

GRAVY (calculated)

-0.300

Length

681 amino acids

Sequence
(BLAST)

001: MATAALLRSL RRREFATSSI SAYRTLASNT KPSWCPSLVG AKWAGLARPF SSKPAGNEII GIDLGTTNSC VAVMEGKNPK VIENSEGART TPSVVAFNQK
101: GELLVGTPAK RQAVTNPTNT LSGTKRLIGR RFDDPQTQKE MKMVPYKIVK GSNGDAWVEA NGQQYSPSQI GAFILTKMKE TAEAYLGKSI NKAVITVPAY
201: FNDAQRQATK DAGRIAGLDV QRIINEPTAA ALSYGMNSKE GLVAVFDLGG GTFDVSILEI SNGVFEVKAT NGDTFLGGED FDNALLEFLV SEFKRTEGID
301: LSKDKLALQR LREAAEKAKI ELSSTSQTDI NLPFITADAS GAKHLNITLT RSKFETLVNN LIERTRNPCK NCLKDAGVSL KDVDEVLLVG GMTRVPKVQE
401: IVSEIFGKSP SKGVNPDEAV AMGAALQGGI LRGDVKELLL LDVTPLSLGI ETLGGIFTRL INRNTTIPTK KSQVFSTAAD NQTQVGIKVL QGEREIASDN
501: KLLGEFELVG IPPAPRGLPQ IEVTFDIDAN GMVTVSAKDK ATSKEQQITI RSSGGLSEDE IDKMVREAEM HAQKDQERKA LIDIRNSADT TIYSIEKSLS
601: EYKDKVPKEV VTEIETAISD LRAAMGTENI DDIKAKLDAA NKAVSKIGEH MAGGSSGGAS GGGGAQGGDQ PPEAEYEEVK K

Best Arabidopsis Sequence Match ( AT5G09590.1 )
(BLAST)

001: MATAALLRSI RRREVVSSPF SAYRCLSSSG KASLNSSYLG QNFRSFSRAF SSKPAGNDVI GIDLGTTNSC VAVMEGKNPK VIENAEGART TPSVVAFNTK
101: GELLVGTPAK RQAVTNPTNT VSGTKRLIGR KFDDPQTQKE MKMVPYKIVR APNGDAWVEA NGQQYSPSQI GAFILTKMKE TAEAYLGKSV TKAVVTVPAY
201: FNDAQRQATK DAGRIAGLDV ERIINEPTAA ALSYGMTNKE GLIAVFDLGG GTFDVSVLEI SNGVFEVKAT NGDTFLGGED FDNALLDFLV NEFKTTEGID
301: LAKDRLALQR LREAAEKAKI ELSSTSQTEI NLPFITADAS GAKHFNITLT RSRFETLVNH LIERTRDPCK NCLKDAGISA KEVDEVLLVG GMTRVPKVQS
401: IVAEIFGKSP SKGVNPDEAV AMGAALQGGI LRGDVKELLL LDVTPLSLGI ETLGGVFTRL ITRNTTIPTK KSQVFSTAAD NQTQVGIRVL QGEREMATDN
501: KLLGEFDLVG IPPSPRGVPQ IEVTFDIDAN GIVTVSAKDK TTGKVQQITI RSSGGLSEDD IQKMVREAEL HAQKDKERKE LIDTKNTADT TIYSIEKSLG
601: EYREKIPSEI AKEIEDAVAD LRSASSGDDL NEIKAKIEAA NKAVSKIGEH MSGGSGGGSA PGGGSEGGSD QAPEAEYEEV KK

Arabidopsis Description

HSP70-10Heat shock 70 kDa protein 10, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LDZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.