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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, endoplasmic reticulum, unclear, cytosol, nucleus

Predictor Summary:
  • cytosol 4
  • plastid 1
  • mitochondrion 2
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, extracellular, nucleus, unclear
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:endoplasmic reticulum, mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400049441 Potato cytosol 99.07 98.61
Solyc09g010630.2.1 Tomato extracellular 96.12 95.38
Solyc06g076020.2.1 Tomato cytosol, nucleus, plastid, unclear 94.25 93.67
Solyc04g011440.2.1 Tomato cytosol, extracellular, nucleus, plastid, unclear 93.79 92.78
Solyc11g066100.1.1 Tomato cytosol, unclear 93.32 91.9
Solyc11g066060.1.1 Tomato extracellular, nucleus, unclear 95.81 88.4
Solyc03g117630.1.1 Tomato cytosol 86.65 85.32
Solyc07g005820.2.1 Tomato cytosol 83.39 82.11
Solyc08g082820.2.1 Tomato extracellular 64.44 62.31
Solyc03g082920.2.1 Tomato nucleus, plastid 63.82 61.62
Solyc06g052050.2.1 Tomato endoplasmic reticulum, nucleus, unclear 59.01 61.39
Solyc01g099660.2.1 Tomato extracellular 60.56 58.3
Solyc01g106260.2.1 Tomato plastid 47.2 45.37
Solyc01g106210.2.1 Tomato plastid 47.52 44.93
Solyc11g020040.1.1 Tomato plastid 47.2 43.93
Solyc01g103450.2.1 Tomato plastid 47.2 43.24
Protein Annotations
Gene3D:1.20.1270.10MapMan:19.1.5.1Gene3D:2.60.34.10Gene3D:3.30.30.30Gene3D:3.30.420.40Gene3D:3.90.640.10
ncoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524InterPro:HSP70_C_sf
InterPro:HSP70_peptide-bd_sfInterPro:Heat_shock_70_CSInterPro:Hsp_70_famInterPro:IPR029047InterPro:IPR029048UniProt:K4D473
PFAM:PF00012PRINTS:PR00301ScanProsite:PS00297ScanProsite:PS00329ScanProsite:PS01036PANTHER:PTHR19375
PANTHER:PTHR19375:SF323SUPFAM:SSF100920SUPFAM:SSF100934SUPFAM:SSF53067EnsemblPlantsGene:Solyc10g086410.2EnsemblPlants:Solyc10g086410.2.1
UniParc:UPI00027694CBSEG:seg::::
Description
No Description!
Coordinates
chr10:+:65236863..65240232
Molecular Weight (calculated)
70783.2 Da
IEP (calculated)
4.805
GRAVY (calculated)
-0.423
Length
644 amino acids
Sequence
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVGFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FSDASVQSDM KLWPFKVIPG
101: PGDKPMIVVN YKGEEKQFSA EEISSMVLIK MKEIAEAFLG TTVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIK DEKIASKLSA DDRTKIEDAI EQAIQWLDGN QLAEAEEFED
601: KMKELESLCN PIIAKMYQGA GGDMDDEGPA PSGGGAGPKI EEVD
Best Arabidopsis Sequence Match ( AT3G12580.1 )
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD
Arabidopsis Description
MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.