Factsheet for PGSC0003DMT400049441

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g086410.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, nucleus, unclear	98.61	99.07
PGSC0003DMT400023039	Potato	cytosol, extracellular	95.83	95.53
PGSC0003DMT400001058	Potato	cytosol	95.05	94.76
PGSC0003DMT400078163	Potato	cytosol	94.28	94.14
PGSC0003DMT400071337	Potato	cytosol	92.89	92.6
PGSC0003DMT400001182	Potato	cytosol	92.27	91.56
PGSC0003DMT400073713	Potato	cytosol	85.94	87.01
PGSC0003DMT400036856	Potato	cytosol	86.71	85.78
PGSC0003DMT400029104	Potato	cytosol	79.29	83.55
PGSC0003DMT400022442	Potato	cytosol	61.98	82.51
PGSC0003DMT400031937	Potato	extracellular	64.61	62.67
PGSC0003DMT400047710	Potato	endoplasmic reticulum	64.14	62.13
PGSC0003DMT400063543	Potato	endoplasmic reticulum	60.28	58.3
PGSC0003DMT400008101	Potato	mitochondrion	46.99	45.1
PGSC0003DMT400027703	Potato	mitochondrion	46.99	44.9
PGSC0003DMT400064031	Potato	cytosol, plastid	47.14	43.2

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:102603624	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40
Gene3D:3.90.640.10	ProteinID:CAA78036	ProteinID:CAA78036.1	ProteinID:CAA78037	ProteinID:CAA78037.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf
InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	UniProt:M1BNR4	PFAM:PF00012
EnsemblPlantsGene:PGSC0003DMG400019208	PGSC:PGSC0003DMG400019208	EnsemblPlants:PGSC0003DMT400049441	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329
ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF323	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067
UniParc:UPI000296341E	RefSeq:XP_006349514.1	EMBL:Z11984	EMBL:Z11985	SEG:seg	:

Description

Heat shock cognate 70 kDa protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400019208]

Coordinates

chr10:-:51360233..51363538

Molecular Weight (calculated)

70898.2 Da

IEP (calculated)

4.770

GRAVY (calculated)

-0.423

Length

647 amino acids

Sequence
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVGFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FSDASVQSDM KLWPFKVIPG
101: PGDKPMIVVN YKGEDKQFSA EEISSMVLIK MKEIAEAFLG STVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVAPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIK DEKIASKLSA DDKTKIDDAI EQAIQWLDGN QLAEAEEFED
601: KMKELESLCN PIIAKMYQGA GGDGGDMDDE GPAPSGGGAG PKIEEVD

Best Arabidopsis Sequence Match ( AT3G12580.1 )
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD

Arabidopsis Description

MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.