Factsheet for PGSC0003DMT400031937

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 10
vacuole 5
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

extracellular: 22313117
extracellular: 28248230

msms PMID: 28248230 doi

E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g082820.2.1	Tomato	extracellular	98.65	98.8
KRH60086	Soybean	endoplasmic reticulum	93.4	93.26
VIT_02s0025g02140.t01	Wine grape	endoplasmic reticulum	92.95	92.95
KRH41370	Soybean	endoplasmic reticulum	92.2	92.2
PGSC0003DMT400047710	Potato	endoplasmic reticulum	92.2	92.07
GSMUA_Achr9P23710_001	Banana	endoplasmic reticulum	82.76	90.49
VIT_16s0098g01580.t01	Wine grape	endoplasmic reticulum	90.4	90.4
CDX84809	Canola	endoplasmic reticulum	86.66	90.03
CDY23972	Canola	endoplasmic reticulum	86.66	90.03
AT5G28540.1	Thale cress	endoplasmic reticulum	90.25	89.99
CDX79726	Canola	endoplasmic reticulum	86.51	89.88
GSMUA_Achr3P27250_001	Banana	endoplasmic reticulum	80.96	89.85
CDX67525	Canola	endoplasmic reticulum	77.66	89.77
CDY46766	Canola	endoplasmic reticulum	86.36	89.72
Bra022819.1-P	Field mustard	endoplasmic reticulum	89.95	89.69
Zm00001d014993_P001	Maize	endoplasmic reticulum	89.06	89.59
CDY63497	Canola	endoplasmic reticulum	86.21	89.56
Zm00001d054043_P007	Maize	endoplasmic reticulum	88.91	89.44
CDX77423	Canola	cytosol, endoplasmic reticulum	86.06	89.41
Bra028521.1-P	Field mustard	endoplasmic reticulum	89.06	89.32
TraesCS6D01G049100.1	Wheat	golgi	88.91	89.17
TraesCS6B01G058300.1	Wheat	endoplasmic reticulum	88.91	89.17
Os02t0115900-02	Rice	plasma membrane	88.91	89.17
TraesCS6A01G042600.1	Wheat	golgi	88.91	89.17
Bra015047.1-P	Field mustard	endoplasmic reticulum	88.91	89.04
AT5G42020.3	Thale cress	endoplasmic reticulum	89.66	88.86
KRH60091	Soybean	nucleus	92.95	88.45
CDY13371	Canola	cytosol, endoplasmic reticulum	89.06	88.26
Bra023110.1-P	Field mustard	endoplasmic reticulum	84.86	88.16
KRH41372	Soybean	endoplasmic reticulum	92.2	86.86
KXG29291	Sorghum	plasma membrane	86.06	84.66
GSMUA_Achr4P11940_001	Banana	cytosol	89.95	83.1
PGSC0003DMT400063543	Potato	endoplasmic reticulum	75.11	74.89
PGSC0003DMT400073713	Potato	cytosol	62.22	64.95
PGSC0003DMT400049441	Potato	cytosol	62.67	64.61
PGSC0003DMT400071337	Potato	cytosol	62.52	64.25
PGSC0003DMT400001182	Potato	cytosol	62.67	64.11
PGSC0003DMT400078163	Potato	cytosol	62.22	64.04
PGSC0003DMT400023039	Potato	cytosol, extracellular	62.07	63.79
PGSC0003DMT400022442	Potato	cytosol	46.48	63.79
PGSC0003DMT400001058	Potato	cytosol	61.92	63.64
PGSC0003DMT400029104	Potato	cytosol	58.02	63.03
PGSC0003DMT400036856	Potato	cytosol	61.77	63.0
GSMUA_Achr5P10770_001	Banana	cytosol	68.37	61.79
PGSC0003DMT400008101	Potato	mitochondrion	48.43	47.92
PGSC0003DMT400027703	Potato	mitochondrion	48.58	47.86
PGSC0003DMT400064031	Potato	cytosol, plastid	46.93	44.33

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:102598457	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1
ProteinID:CAA78035	ProteinID:CAA78035.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047
InterPro:IPR029048	UniProt:M1AWJ2	PFAM:PF00012	EnsemblPlantsGene:PGSC0003DMG400012254	PGSC:PGSC0003DMG400012254	EnsemblPlants:PGSC0003DMT400031937
PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PFscan:PS51257	PANTHER:PTHR19375
PANTHER:PTHR19375:SF317	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	SignalP:SignalP-noTM	UniParc:UPI000294C8BC
RefSeq:XP_006343810.1	EMBL:Z11983	SEG:seg	:	:	:

Description

Luminal-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012254]

Coordinates

chr8:+:56395384..56399788

Molecular Weight (calculated)

73467.3 Da

IEP (calculated)

4.776

GRAVY (calculated)

-0.458

Length

667 amino acids

Sequence
(BLAST)

001: MAGCLRRGNS LVVLTIVLLG CLSALSTAKE EATKLGTVIG IDLGTTYSCV GVYKNGHVEI IANDQGNRIT PSWVAFTDNE RLIGEAAKNL AAVNPERTIF
101: DVKRLIGRKF EDKEVQRDMK LVPYKIISKD GKPYIQVKIK DGEVKVFSPE EISAMILTKM KETAEAFLGK TIKDAVVTVP AYFNDAQRQA TKDAGVIAGL
201: NVARIINEPT AAAIAYGLDK KDGEKNILVF DLGGGTFDVS ILTIDNGVFE VLATNGDTHL GGEDFDQRIM EYFIKLIKKK HGKDISKDNR ALSKLRREAE
301: RAKRSLSSQH QVRVEIESLF DGTDFSEPLT RARFEELNND LFRKTMGPVK KAMDDAGLQK NQIDEIVLVG GSTRIPKVQQ LLKDYFDGKE PSKGVNPDEA
401: VAYGAAVQGG ILSGEGGDET KDILLLDVAP LTLGIETVGG VMTKLIPRNT VIPTKKSQVF TTYQDQQTTV SIQVFEGERS LTKDCRNLGK FDLTGIPPAP
501: RGTPQIEVTF EVDANGILNV KAEDKGTGKA EKITITNDKG RLSQEEIERM VREAEEFAEE DKKVKEKIDA RNALETYVYN MKNQINDKDK LADKLESDEK
601: EKIETATKEA LEWLDDNQSA EKEDYDEKLK EVEAVCNPII TAVYQRSGGS PGGGASEEED DDSHDEL

Best Arabidopsis Sequence Match ( AT5G42020.1 )
(BLAST)

001: MARSFGANST VVLAIIFFGC LFAFSTAKEE ATKLGSVIGI DLGTTYSCVG VYKNGHVEII ANDQGNRITP SWVGFTDSER LIGEAAKNQA AVNPERTVFD
101: VKRLIGRKFE DKEVQKDRKL VPYQIVNKDG KPYIQVKIKD GETKVFSPEE ISAMILTKMK ETAEAYLGKK IKDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSV LTIDNGVFEV LSTNGDTHLG GEDFDHRIME YFIKLIKKKH QKDISKDNKA LGKLRRECER
301: AKRALSSQHQ VRVEIESLFD GVDLSEPLTR ARFEELNNDL FRKTMGPVKK AMDDAGLQKS QIDEIVLVGG STRIPKVQQL LKDFFEGKEP NKGVNPDEAV
401: AYGAAVQGGI LSGEGGDETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVS IQVFEGERSL TKDCRLLGKF DLTGVPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKASGKSE KITITNEKGR LSQEEIDRMV KEAEEFAEED KKVKEKIDAR NALETYVYNM KNQVSDKDKL ADKLEGDEKE
601: KIEAATKEAL EWLDENQNSE KEEYDEKLKE VEAVCNPIIT AVYQRSGGAP GAGGESSTEE EDESHDEL

Arabidopsis Description

BIPHeat shock protein 70 (Hsp 70) family protein [Source:TAIR;Acc:AT5G42020]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.