Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 4
- endoplasmic reticulum 7
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63497 | Canola | endoplasmic reticulum | 93.12 | 97.04 |
| CDY23972 | Canola | endoplasmic reticulum | 93.12 | 97.04 |
| CDX84809 | Canola | endoplasmic reticulum | 93.12 | 97.04 |
| Bra022819.1-P | Field mustard | endoplasmic reticulum | 97.01 | 97.01 |
| CDX79726 | Canola | endoplasmic reticulum | 92.97 | 96.88 |
| CDX77423 | Canola | cytosol, endoplasmic reticulum | 92.83 | 96.73 |
| CDY46766 | Canola | endoplasmic reticulum | 92.68 | 96.57 |
| Bra028521.1-P | Field mustard | endoplasmic reticulum | 95.96 | 96.54 |
| CDX67525 | Canola | endoplasmic reticulum | 83.11 | 96.36 |
| AT5G42020.3 | Thale cress | endoplasmic reticulum | 96.41 | 95.84 |
| Bra015047.1-P | Field mustard | endoplasmic reticulum | 95.37 | 95.8 |
| Bra023110.1-P | Field mustard | endoplasmic reticulum | 91.48 | 95.33 |
| CDY13371 | Canola | cytosol, endoplasmic reticulum | 95.22 | 94.65 |
| KRH41370 | Soybean | endoplasmic reticulum | 91.48 | 91.75 |
| KRH60086 | Soybean | endoplasmic reticulum | 91.33 | 91.47 |
| VIT_02s0025g02140.t01 | Wine grape | endoplasmic reticulum | 90.43 | 90.7 |
| PGSC0003DMT400031937 | Potato | extracellular | 89.99 | 90.25 |
| PGSC0003DMT400047710 | Potato | endoplasmic reticulum | 89.69 | 89.82 |
| TraesCS6A01G042600.1 | Wheat | golgi | 88.64 | 89.17 |
| TraesCS6B01G058300.1 | Wheat | endoplasmic reticulum | 88.64 | 89.17 |
| TraesCS6D01G049100.1 | Wheat | golgi | 88.64 | 89.17 |
| VIT_16s0098g01580.t01 | Wine grape | endoplasmic reticulum | 88.64 | 88.91 |
| Os02t0115900-02 | Rice | plasma membrane | 88.34 | 88.87 |
| Zm00001d014993_P001 | Maize | endoplasmic reticulum | 87.59 | 88.39 |
| Zm00001d054043_P007 | Maize | endoplasmic reticulum | 87.44 | 88.24 |
| GSMUA_Achr9P23710_001 | Banana | endoplasmic reticulum | 80.27 | 88.03 |
| GSMUA_Achr3P27250_001 | Banana | endoplasmic reticulum | 78.77 | 87.69 |
| Solyc06g052050.2.1 | Tomato | endoplasmic reticulum, nucleus, unclear | 81.02 | 87.56 |
| KRH60091 | Soybean | nucleus | 90.58 | 86.45 |
| KRH41372 | Soybean | endoplasmic reticulum | 89.84 | 84.89 |
| KXG29291 | Sorghum | plasma membrane | 85.2 | 84.07 |
| GSMUA_Achr4P11940_001 | Banana | cytosol | 88.34 | 81.86 |
| AT1G09080.1 | Thale cress | endoplasmic reticulum | 77.73 | 77.04 |
| AT3G09440.2 | Thale cress | cytosol | 62.48 | 64.41 |
| AT1G56410.1 | Thale cress | cytosol | 58.45 | 63.37 |
| AT5G02490.1 | Thale cress | cytosol | 61.73 | 63.25 |
| AT5G02500.1 | Thale cress | cytosol | 61.44 | 63.13 |
| AT3G12580.1 | Thale cress | cytosol | 61.29 | 63.08 |
| AT1G16030.1 | Thale cress | cytosol | 59.79 | 61.92 |
| GSMUA_Achr5P10770_001 | Banana | cytosol | 67.26 | 60.98 |
| AT4G37910.1 | Thale cress | mitochondrion | 48.73 | 47.8 |
| AT5G09590.1 | Thale cress | mitochondrion | 48.43 | 47.51 |
| AT4G24280.1 | Thale cress | plastid | 46.64 | 43.45 |
| AT5G49910.1 | Thale cress | plastid | 46.19 | 43.04 |
Protein Annotations
| Gene3D:1.20.1270.10 | Gene3D:2.60.34.10 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | MapMan:35.1 | EntrezGene:832950 |
| ProteinID:AAF88019.1 | ProteinID:AED93812.1 | EMBL:AK221441 | ArrayExpress:AT5G28540 | EnsemblPlantsGene:AT5G28540 | RefSeq:AT5G28540 |
| TAIR:AT5G28540 | RefSeq:AT5G28540-TAIR-G | EnsemblPlants:AT5G28540.1 | TAIR:AT5G28540.1 | ProteinID:BAA13947.1 | Symbol:BIP1 |
| EMBL:BT000453 | EMBL:BT001212 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005783 | GO:GO:0005788 |
| GO:GO:0005794 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009506 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016592 | GO:GO:0019538 |
| GO:GO:0030312 | GO:GO:0030433 | InterPro:HSP70_C_sf | InterPro:HSP70_peptide-bd_sf | InterPro:Heat_shock_70_CS | InterPro:Hsp_70_fam |
| InterPro:IPR029047 | InterPro:IPR029048 | RefSeq:NP_198206.1 | PFAM:PF00012 | PO:PO:0000005 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0005020 | PO:PO:0006339 | PO:PO:0007131 | PO:PO:0009001 |
| PO:PO:0009025 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00301 | ScanProsite:PS00297 | ScanProsite:PS00329 |
| ScanProsite:PS01036 | PFscan:PS51257 | PANTHER:PTHR19375 | PANTHER:PTHR19375:SF317 | UniProt:Q9LKR3 | SUPFAM:SSF100920 |
| SUPFAM:SSF100934 | SUPFAM:SSF53067 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0000001AE9 | EMBL:Z17760 |
| SEG:seg | : | : | : | : | : |
Description
MED37AMediator of RNA polymerase II transcription subunit 37a [Source:UniProtKB/Swiss-Prot;Acc:Q9LKR3]
Coordinates
chr5:-:10540123..10543558
Molecular Weight (calculated)
73633.4 Da
IEP (calculated)
4.811
GRAVY (calculated)
-0.463
Length
669 amino acids
Sequence
(BLAST)
(BLAST)
001: MARSFGANST VVLAIIFFGC LFALSSAIEE ATKLGSVIGI DLGTTYSCVG VYKNGHVEII ANDQGNRITP SWVGFTDSER LIGEAAKNQA AVNPERTVFD
101: VKRLIGRKFE DKEVQKDRKL VPYQIVNKDG KPYIQVKIKD GETKVFSPEE ISAMILTKMK ETAEAYLGKK IKDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSV LTIDNGVFEV LSTNGDTHLG GEDFDHRVME YFIKLIKKKH QKDISKDNKA LGKLRRECER
301: AKRALSSQHQ VRVEIESLFD GVDFSEPLTR ARFEELNNDL FRKTMGPVKK AMDDAGLQKS QIDEIVLVGG STRIPKVQQL LKDFFEGKEP NKGVNPDEAV
401: AYGAAVQGGI LSGEGGDETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVS IQVFEGERSL TKDCRLLGKF DLNGIPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKASGKSE KITITNEKGR LSQEEIDRMV KEAEEFAEED KKVKEKIDAR NALETYVYNM KNQVNDKDKL ADKLEGDEKE
601: KIEAATKEAL EWLDENQNSE KEEYDEKLKE VEAVCNPIIT AVYQRSGGAP GGAGGESSTE EEDESHDEL
101: VKRLIGRKFE DKEVQKDRKL VPYQIVNKDG KPYIQVKIKD GETKVFSPEE ISAMILTKMK ETAEAYLGKK IKDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSV LTIDNGVFEV LSTNGDTHLG GEDFDHRVME YFIKLIKKKH QKDISKDNKA LGKLRRECER
301: AKRALSSQHQ VRVEIESLFD GVDFSEPLTR ARFEELNNDL FRKTMGPVKK AMDDAGLQKS QIDEIVLVGG STRIPKVQQL LKDFFEGKEP NKGVNPDEAV
401: AYGAAVQGGI LSGEGGDETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVS IQVFEGERSL TKDCRLLGKF DLNGIPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKASGKSE KITITNEKGR LSQEEIDRMV KEAEEFAEED KKVKEKIDAR NALETYVYNM KNQVNDKDKL ADKLEGDEKE
601: KIEAATKEAL EWLDENQNSE KEEYDEKLKE VEAVCNPIIT AVYQRSGGAP GGAGGESSTE EEDESHDEL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.