Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G02500.1 | Thale cress | cytosol | 92.65 | 92.93 |
| AT3G09440.2 | Thale cress | cytosol | 90.96 | 91.53 |
| AT3G12580.1 | Thale cress | cytosol | 89.89 | 90.31 |
| AT1G56410.1 | Thale cress | cytosol | 84.84 | 89.79 |
| AT1G16030.1 | Thale cress | cytosol | 81.32 | 82.2 |
| Zm00001d048687_P002 | Maize | cytosol, extracellular, plasma membrane | 57.89 | 73.4 |
| TraesCS6D01G402500.1 | Wheat | cytosol | 56.97 | 71.81 |
| AT5G28540.1 | Thale cress | endoplasmic reticulum | 63.25 | 61.73 |
| AT5G42020.3 | Thale cress | endoplasmic reticulum | 62.79 | 60.92 |
| AT1G09080.1 | Thale cress | endoplasmic reticulum | 59.11 | 57.19 |
| AT5G09590.1 | Thale cress | mitochondrion | 47.78 | 45.75 |
| AT4G37910.1 | Thale cress | mitochondrion | 46.86 | 44.87 |
| AT4G24280.1 | Thale cress | plastid | 47.01 | 42.76 |
| AT5G49910.1 | Thale cress | plastid | 46.86 | 42.62 |
Protein Annotations
| Gene3D:1.20.1270.10 | MapMan:19.1.5.1 | Gene3D:2.60.34.10 | Gene3D:3.30.30.30 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 |
| EntrezGene:831856 | UniProt:A0A178UTH3 | ProteinID:AAA32820.1 | ProteinID:AED90479.1 | EMBL:AK222068 | EMBL:AK227090 |
| ArrayExpress:AT5G02490 | EnsemblPlantsGene:AT5G02490 | RefSeq:AT5G02490 | TAIR:AT5G02490 | RefSeq:AT5G02490-TAIR-G | EnsemblPlants:AT5G02490.1 |
| TAIR:AT5G02490.1 | EMBL:AY093152 | Unigene:At.74798 | EMBL:BT008411 | ProteinID:CAA54420.1 | ProteinID:CAB85986.1 |
| ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009408 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009615 | GO:GO:0009617 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0030312 | GO:GO:0046686 | InterPro:HSP70_C_sf | InterPro:HSP70_peptide-bd_sf | InterPro:Heat_shock_70_CS | InterPro:Hsp_70_fam |
| InterPro:IPR029047 | InterPro:IPR029048 | RefSeq:NP_195869.1 | ProteinID:OAO96464.1 | UniProt:P22954 | PFAM:PF00012 |
| PO:PO:0000005 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007123 | PO:PO:0007131 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00301 |
| ScanProsite:PS00297 | ScanProsite:PS00329 | ScanProsite:PS01036 | PANTHER:PTHR19375 | PANTHER:PTHR19375:SF323 | SUPFAM:SSF100920 |
| SUPFAM:SSF100934 | SUPFAM:SSF53067 | UniParc:UPI0000001178 | EMBL:Y08892 | SEG:seg | : |
Description
MED37DProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:P22954]
Coordinates
chr5:-:550035..552827
Molecular Weight (calculated)
71390.8 Da
IEP (calculated)
4.753
GRAVY (calculated)
-0.420
Length
653 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDASVQSDR QLWPFTIISG
101: TAEKPMIVVE YKGEEKQFAA EEISSMVLIK MREIAEAFLG TTVKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVLRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKQDIT GQPRALRRLR TACERAKRTL SSTAQTTIEI DSLYGGADFY
301: SPITRARFEE MNMDLFRKCM EPVEKCLRDA KMDKSTVHEI VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI QRNTTIPTKK EQVFSTYSDN QPGVLIQVFE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGKKNKITIT NDKGRLSKED IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIR DEKIGEKLPA ADKKKVEDSI EEAIQWLDGN QLGEADEFED
601: KMKELESVCN PIIAKMYQGG AGGEAGGPGA SGMDEDEAPP ASGGAGPKIE EVD
101: TAEKPMIVVE YKGEEKQFAA EEISSMVLIK MREIAEAFLG TTVKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVLRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKQDIT GQPRALRRLR TACERAKRTL SSTAQTTIEI DSLYGGADFY
301: SPITRARFEE MNMDLFRKCM EPVEKCLRDA KMDKSTVHEI VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI QRNTTIPTKK EQVFSTYSDN QPGVLIQVFE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGKKNKITIT NDKGRLSKED IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIR DEKIGEKLPA ADKKKVEDSI EEAIQWLDGN QLGEADEFED
601: KMKELESVCN PIIAKMYQGG AGGEAGGPGA SGMDEDEAPP ASGGAGPKIE EVD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.