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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra038734.1-P Field mustard cytosol 97.54 97.54
Bra001457.1-P Field mustard cytosol 88.15 97.45
CDY50531 Canola cytosol 97.38 97.38
CDY52661 Canola cytosol 96.92 97.37
CDY00784 Canola cytosol 96.92 96.92
CDX73815 Canola cytosol 97.08 96.78
Os01t0840100-01 Rice nucleus, plasma membrane, plastid 94.31 94.6
EES19649 Sorghum cytosol 94.31 94.45
Os05t0460000-01 Rice cytosol, nucleus, plastid 93.85 94.43
HORVU1Hr1G072220.4 Barley cytosol 85.38 94.23
KRH01631 Soybean endoplasmic reticulum 93.38 93.53
KRH70484 Soybean cytosol 80.46 93.39
KXG26133 Sorghum cytosol 88.31 93.18
TraesCS1B01G294300.1 Wheat cytosol, golgi, unclear 92.77 93.06
TraesCS1D01G284000.2 Wheat cytosol, golgi 92.62 92.9
Zm00001d010529_P001 Maize cytosol 92.62 92.76
TraesCS1A01G285000.2 Wheat cytosol, golgi 92.46 92.75
EES01731 Sorghum cytosol 92.46 92.75
Zm00001d042922_P002 Maize cytosol 92.46 92.75
Zm00001d012420_P001 Maize plasma membrane 92.31 92.59
Os03t0276500-01 Rice plasma membrane 92.46 92.46
AT5G02500.1 Thale cress cytosol 91.54 91.4
TraesCS3D01G351900.1 Wheat cytosol 91.54 91.26
TraesCS3D01G352400.2 Wheat cytosol, golgi 90.77 91.19
HORVU4Hr1G059390.1 Barley cytosol 91.23 91.09
EER95095 Sorghum cytosol 90.92 91.06
TraesCS3B01G390800.1 Wheat cytosol 86.77 90.97
TraesCS3B01G390700.1 Wheat cytosol 91.23 90.95
TraesCS4B01G206700.1 Wheat cytosol 91.08 90.94
TraesCS4D01G207500.1 Wheat cytosol 91.08 90.94
AT3G09440.2 Thale cress cytosol 90.46 90.6
Zm00001d028630_P005 Maize cytosol, extracellular, nucleus, plasma membrane, plastid 90.31 90.45
TraesCS4A01G097900.2 Wheat cytosol 90.92 90.23
AT5G02490.1 Thale cress cytosol 90.31 89.89
AT1G56410.1 Thale cress cytosol 82.62 87.03
AT1G16030.1 Thale cress cytosol 84.46 84.98
HORVU3Hr1G086500.3 Barley cytosol, plastid 92.0 84.82
AT5G28540.1 Thale cress endoplasmic reticulum 63.08 61.29
AT5G42020.3 Thale cress endoplasmic reticulum 62.62 60.48
AT1G09080.1 Thale cress endoplasmic reticulum 60.46 58.22
AT5G09590.1 Thale cress mitochondrion 48.15 45.89
AT4G37910.1 Thale cress mitochondrion 47.69 45.45
AT4G24280.1 Thale cress plastid 46.77 42.34
AT5G49910.1 Thale cress plastid 46.31 41.92
Protein Annotations
Gene3D:1.20.1270.10MapMan:19.1.5.1Gene3D:2.60.34.10Gene3D:3.30.30.30Gene3D:3.30.420.40Gene3D:3.90.640.10
EntrezGene:820438UniProt:A0A178VCC0ProteinID:AAG51030.1ProteinID:AEE75218.1EMBL:AJ002551ArrayExpress:AT3G12580
EnsemblPlantsGene:AT3G12580RefSeq:AT3G12580TAIR:AT3G12580RefSeq:AT3G12580-TAIR-GEnsemblPlants:AT3G12580.1TAIR:AT3G12580.1
EMBL:AY054183EMBL:AY054190EMBL:AY059885Unigene:At.47608ProteinID:BAB02269.1ncoils:Coil
GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575
GO:GO:0005576GO:GO:0005618GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737
GO:GO:0005739GO:GO:0005773GO:GO:0005774GO:GO:0005794GO:GO:0005829GO:GO:0005886
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006464GO:GO:0006950GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009266GO:GO:0009408GO:GO:0009605GO:GO:0009607
GO:GO:0009615GO:GO:0009617GO:GO:0009628GO:GO:0009644GO:GO:0009987GO:GO:0016020
GO:GO:0016567GO:GO:0019538GO:GO:0030312GO:GO:0031625GO:GO:0042542GO:GO:0046686
GO:GO:0048046Symbol:HSP70InterPro:HSP70_C_sfInterPro:HSP70_peptide-bd_sfInterPro:Heat_shock_70_CSInterPro:Hsp_70_fam
InterPro:IPR029047InterPro:IPR029048RefSeq:NP_187864.1ProteinID:OAP03566.1PFAM:PF00012PO:PO:0000005
PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001017PO:PO:0001040PO:PO:0001078
PO:PO:0001185PO:PO:0004507PO:PO:0006339PO:PO:0007095PO:PO:0007115PO:PO:0007123
PO:PO:0007131PO:PO:0007611PO:PO:0007616PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025195PO:PO:0025281PRINTS:PR00301ScanProsite:PS00297ScanProsite:PS00329
ScanProsite:PS01036PANTHER:PTHR19375PANTHER:PTHR19375:SF323UniProt:Q9LHA8SUPFAM:SSF100920SUPFAM:SSF100934
SUPFAM:SSF53067UniParc:UPI00000AB92DSEG:seg:::
Description
MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
Coordinates
chr3:-:3991117..3993886
Molecular Weight (calculated)
71105.4 Da
IEP (calculated)
4.879
GRAVY (calculated)
-0.434
Length
650 amino acids
Sequence
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.