Factsheet for Zm00001d042922_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011401_P001
Zm00001d012823_P001
Zm00001d034886_P001
Zm00001d044172_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12580.1	Zm00001d011401_P001	AT4G11260.1	18065690
AT3G12580.1	Zm00001d044172_P002	AT4G11260.1	18065690
AT3G12580.1	Zm00001d012823_P001	AT4G17750.1	11807141
AT3G12580.1	Zm00001d034886_P001	AT4G17750.1	11807141

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01731	Sorghum	cytosol	98.61	98.61
Zm00001d012420_P001	Maize	plasma membrane	97.99	97.99
Zm00001d010529_P001	Maize	cytosol	96.3	96.15
TraesCS3D01G351900.1	Wheat	cytosol	95.37	94.79
TraesCS3D01G352400.2	Wheat	cytosol, golgi	94.44	94.59
TraesCS3B01G390700.1	Wheat	cytosol	95.06	94.48
HORVU1Hr1G072220.4	Barley	cytosol	85.34	93.89
TraesCS3B01G390800.1	Wheat	cytosol	89.81	93.87
TraesCS1B01G294300.1	Wheat	cytosol, golgi, unclear	93.36	93.36
KRH70484	Soybean	cytosol	80.56	93.21
TraesCS1D01G284000.2	Wheat	cytosol, golgi	93.21	93.21
KRH01631	Soybean	endoplasmic reticulum	93.21	93.07
TraesCS1A01G285000.2	Wheat	cytosol, golgi	93.06	93.06
Bra001457.1-P	Field mustard	cytosol	84.41	93.03
Zm00001d041550_P005	Maize	cytosol	92.75	92.6
Zm00001d030725_P003	Maize	plasma membrane	92.75	92.6
CDY52661	Canola	cytosol	92.44	92.58
AT3G12580.1	Thale cress	cytosol	92.75	92.46
CDX73815	Canola	cytosol	92.9	92.33
CDY50531	Canola	cytosol	92.59	92.31
CDY00784	Canola	cytosol	92.59	92.31
Bra038734.1-P	Field mustard	cytosol	92.59	92.31
Zm00001d028630_P005	Maize	cytosol, extracellular, nucleus, plasma membrane, plastid	91.98	91.83
Zm00001d047799_P002	Maize	cytosol, extracellular, plasma membrane, plastid	91.36	90.8
HORVU3Hr1G086500.3	Barley	cytosol, plastid	95.68	87.94
Zm00001d048687_P002	Maize	cytosol, extracellular, plasma membrane	60.34	75.92
Zm00001d028639_P001	Maize	cytosol	56.79	68.15
Zm00001d054043_P007	Maize	endoplasmic reticulum	64.2	62.75
Zm00001d014993_P001	Maize	endoplasmic reticulum	64.2	62.75
Zm00001d013842_P003	Maize	mitochondrion	47.99	45.87
Zm00001d000295_P001	Maize	mitochondrion, plasma membrane	47.38	45.28
Zm00001d006036_P001	Maize	mitochondrion	47.38	45.08
Zm00001d013507_P001	Maize	plastid	47.22	44.8
Zm00001d033591_P001	Maize	plastid	47.07	44.66
Zm00001d023802_P001	Maize	plastid	46.6	42.96
Zm00001d041119_P001	Maize	plastid	46.6	42.96

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:103651028	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40
Gene3D:3.90.640.10	UniProt:A0A1D6N7I4	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047
InterPro:IPR029048	ProteinID:ONM36547.1	ProteinID:ONM36548.1	ProteinID:ONM36549.1	ProteinID:ONM36551.1	ProteinID:ONM36552.1
PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375
PANTHER:PTHR19375:SF323	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	UniParc:UPI000189D27C	EnsemblPlantsGene:Zm00001d042922
EnsemblPlants:Zm00001d042922_P002	EnsemblPlants:Zm00001d042922_T002	SEG:seg	:	:	:

Description

Probable mediator of RNA polymerase II transcription subunit 37c

Coordinates

chr3:-:184004259..184007974

Molecular Weight (calculated)

70848.2 Da

IEP (calculated)

4.834

GRAVY (calculated)

-0.401

Length

648 amino acids

Sequence
(BLAST)

001: MAKGEGPAIG IDLGTTYSCV GVWQHDRVEI IANDQGNRTT PSYVAFTDTE RLIGDAAKNQ VAMNPTNTVF DAKRLIGRRF SDPSVQSDMK LWPFKVIPGP
101: GDKPMIVVSY KGEEKQFAAE EISSMVLIKM KEIAEAYLGS TIKNAVVTVP AYFNDSQRQA TKDAGVIAGL NVMRIINEPT AAAIAYGLDK KASSSGEKNV
201: LIFDLGGGTF DVSLLTIEEG IFEVKATAGD THLGGEDFDN RMVNHFVQEF KRKHKKDISG NPRALRRLRT ACERAKRTLS STAQTTIEID SLFEGIDFYS
301: TITRARFEEL NMDLFRKCME PVEKCLRDAK MDKSSVHDVV LVGGSTRIPK VQQLLQDFFN GKELCKSINP DEAVAYGAAV QAAILSGEGN EKVQDLLLLD
401: VTPLSLGLET AGGVMTVLIP RNTTIPTKKE QVFSTYSDNQ PGVLIQVYEG ERARTKDNNL LGKFELSGIP PAPRGVPQIT VTFDIDANGI LNVSAEDKTT
501: GQKNKITITN DKGRLSKEEI EKMVQEAEKY KAEDEEVKKK VDAKNTLENY AYNMRNTIKD DKIASKLSAD DKKKIEDAVD SATSWLDSNQ LAEVDEFEDK
601: MKELEGICNP IIAKMYQGAG AGMGDAAGMD EDAPSGGSGA GPKIEEVD

Best Arabidopsis Sequence Match ( AT3G09440.1 )
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FTDSSVQSDI KLWPFTLKSG
101: PAEKPMIVVN YKGEDKEFSA EEISSMILIK MREIAEAYLG TTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFDGIDFY
301: APITRARFEE LNIDLFRKCM EPVEKCLRDA KMDKNSIDDV VLVGGSTRIP KVQQLLVDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI QRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVDAKNALEN YAYNMRNTIR DEKIGEKLAG DDKKKIEDSI EAAIEWLEAN QLAECDEFED
601: KMKELESICN PIIAKMYQGG EAGGPAAGGM DEDVPPSAGG AGPKIEEVD

Arabidopsis Description

HSP70-3Heat shock protein 70 (Hsp 70) family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VI76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.