CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93074
EES01101

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12580.1	EES01101	AT4G11260.1	18065690
AT3G12580.1	EER93074	AT4G17750.1	11807141

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028630_P005	Maize	cytosol, extracellular, nucleus, plasma membrane, plastid	98.77	98.77
Os03t0276500-01	Rice	plasma membrane	94.76	94.62
HORVU4Hr1G059390.1	Barley	cytosol	94.61	94.32
TraesCS4B01G206700.1	Wheat	cytosol	94.14	93.86
TraesCS4D01G207500.1	Wheat	cytosol	93.99	93.7
TraesCS4A01G097900.2	Wheat	cytosol	93.84	92.98
Bra001457.1-P	Field mustard	cytosol	84.13	92.86
KXG26133	Sorghum	cytosol	87.98	92.69
EES19649	Sorghum	cytosol	92.45	92.45
KRH01631	Soybean	endoplasmic reticulum	91.99	91.99
EES16191	Sorghum	cytosol	91.68	91.68
EES01731	Sorghum	cytosol	91.37	91.51
CDY00784	Canola	cytosol	91.22	91.08
CDY50531	Canola	cytosol	91.22	91.08
CDY52661	Canola	cytosol	90.75	91.04
CDX73815	Canola	cytosol	91.37	90.95
AT3G12580.1	Thale cress	cytosol	91.06	90.92
KRH70484	Soybean	cytosol	78.43	90.89
Bra038734.1-P	Field mustard	cytosol	90.91	90.77
EER92466	Sorghum	cytosol	87.98	87.58
EER95094	Sorghum	cytosol	59.01	68.64
KXG39678	Sorghum	cytosol	56.55	66.01
KXG39675	Sorghum	cytosol	54.55	65.92
EER95091	Sorghum	cytosol	56.86	65.19
EER92471	Sorghum	cytosol	55.93	63.46
OQU92816	Sorghum	cytosol	42.22	63.13
KXG39677	Sorghum	cytosol	53.0	62.55
OQU92815	Sorghum	cytosol	35.75	60.89
EER95090	Sorghum	cytosol	53.0	60.25
KXG29291	Sorghum	plasma membrane	62.1	59.44
EER93587	Sorghum	endoplasmic reticulum	58.86	56.51
EES01866	Sorghum	endoplasmic reticulum	57.16	55.62
EER91365	Sorghum	mitochondrion	46.84	44.84
KXG37805	Sorghum	plastid	46.38	44.13
EER99104	Sorghum	mitochondrion	45.61	43.66
EES15917	Sorghum	plastid	46.23	42.73

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40	Gene3D:3.90.640.10
EntrezGene:8084930	UniProt:C5WPF7	ncoils:Coil	EnsemblPlants:EER95095	ProteinID:EER95095	ProteinID:EER95095.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf
InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	PFAM:PF00012	PRINTS:PR00301
ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF243	EnsemblPlantsGene:SORBI_3001G420100
SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	unigene:Sbi.17842	UniParc:UPI0001A8312A	RefSeq:XP_002468097.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:70059899..70062529

Molecular Weight (calculated)

71123.4 Da

IEP (calculated)

4.830

GRAVY (calculated)

-0.445

Length

649 amino acids

Sequence
(BLAST)

001: MAGKGDGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLVGDAAKN QVAMNPINTV FDAKRLIGRR FSDASVQSDV KLWPFKVIPG
101: SGDKPMIGVQ FRGEEKQFSA EEISSMILNK MKDTAEAYLG TTIKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKSSSDGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRLVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP RVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILTGEG NEKVQDLLLL
401: DVSPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDMDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNSLEN YAYNMRNTIR DDKIASKLPE ADKKKIDDAI EGAINWLDNN QLAEVDEFED
601: KMKELEGICN PIIAKMYQGA AGPDMAGGMD QDAPPAGGSG AGPKIEEVD

Best Arabidopsis Sequence Match ( AT3G12580.1 )
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD

Arabidopsis Description

MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.