CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047799_P002	Maize	cytosol, extracellular, plasma membrane, plastid	97.55	97.55
Os03t0277300-01	Rice	plastid	96.32	96.17
TraesCS4B01G205700.1	Wheat	cytosol, golgi	94.48	93.76
TraesCS4D01G206600.1	Wheat	cytosol	93.86	93.15
HORVU4Hr1G059260.1	Barley	cytosol	93.86	93.15
KXG26133	Sorghum	cytosol	86.81	91.88
EES19649	Sorghum	cytosol	91.26	91.68
EES01731	Sorghum	cytosol	91.1	91.67
TraesCS4A01G098600.1	Wheat	cytosol	93.71	91.33
KRH24810	Soybean	nucleus	90.64	91.06
KRH29811	Soybean	nucleus	90.49	90.91
Solyc04g011440.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	89.88	90.02
VIT_08s0007g00130.t01	Wine grape	cytosol	89.57	89.98
PGSC0003DMT400071337	Potato	cytosol	89.57	89.98
VIT_06s0004g04470.t01	Wine grape	cytosol	89.88	89.88
GSMUA_Achr8P20830_001	Banana	cytosol, plasma membrane	88.8	89.35
GSMUA_Achr10P...	Banana	cytosol	65.95	89.21
EES16191	Sorghum	cytosol	88.04	88.44
EER95095	Sorghum	cytosol	87.58	87.98
GSMUA_Achr9P03960_001	Banana	cytosol	63.5	81.02
EER95094	Sorghum	cytosol	59.51	69.53
KXG39675	Sorghum	cytosol	55.06	66.85
KXG39678	Sorghum	cytosol	56.75	66.55
EER95091	Sorghum	cytosol	57.52	66.25
OQU92816	Sorghum	cytosol	43.1	64.75
EER92471	Sorghum	cytosol	56.75	64.69
KXG39677	Sorghum	cytosol	54.14	64.18
OQU92815	Sorghum	cytosol	36.04	61.68
EER95090	Sorghum	cytosol	52.76	60.25
KXG29291	Sorghum	plasma membrane	62.27	59.88
EER93587	Sorghum	endoplasmic reticulum	59.97	57.84
EES01866	Sorghum	endoplasmic reticulum	58.59	57.27
EER91365	Sorghum	mitochondrion	48.31	46.46
EER99104	Sorghum	mitochondrion	47.85	46.02
KXG37805	Sorghum	plastid	46.93	44.87
EES15917	Sorghum	plastid	46.17	42.88

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40	Gene3D:3.90.640.10
EntrezGene:8084921	UniProt:C5WPE1	ncoils:Coil	EnsemblPlants:EER92466	ProteinID:EER92466	ProteinID:EER92466.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf
InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	PFAM:PF00012	PRINTS:PR00301
ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF323	EnsemblPlantsGene:SORBI_3001G418600
SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	unigene:Sbi.10668	UniParc:UPI0001A82C81	RefSeq:XP_002465468.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:69932394..69935701

Molecular Weight (calculated)

71463.0 Da

IEP (calculated)

4.925

GRAVY (calculated)

-0.427

Length

652 amino acids

Sequence
(BLAST)

001: MASSKGEGPA IGIDLGTTYS CVGVWQHDRV EIIANDQGNR TTPSYVAFTD TERLIGDAAK NQVAMNPTNT VFDAKRLIGR RFSDPSVQAD MKMWPFKVVP
101: GPADKPMIVV TYKGEEKKFS AEEISSMVLT KMKEIAEAYL STTIKNAVIT VPAYFNDSQR QATKDAGVIA GLNVMRIINE PTAAAIAYGL DKKAASSGEK
201: NVLIFDLGGG TFDVSILTIE EGIFEVKATA GDTHLGGEDF DNRLVNHFVQ EFKRKHKKDI SGNPRALRRL RTACERAKRT LSSTAQTTIE IDSLYEGIDF
301: YATITRARFE ELNMDLFRKC MEPVEKCLRD AKMDKAQIHD VVLVGGSTRI PKVQQLLQDF FNGKELCKSI NPDEAVAYGA AVQAAILSGE GNQKVQDLLL
401: LDVTPLSLGL ETAGGVMTVL IPRNTTIPTK KEQVFSTYSD NQPGVLIQVY EGERTRTKDN NLLGKFELTG IPPAPRGVPQ INVTFDIDAN GILNVSAEDK
501: TTGKKNKITI TNDKGRLSKE EIERMVQEAE KYKAEDEEVK RKVEARNALE NYAYNMRNTV RDEKIASKLP AEDKKKIEDT VEDAIKWLDG NQLAEAEEFE
601: DEMKELENVC NPIISKMYQG GAGAAGMDED VPSGGAGSGG GSGAGPKIEE VD

Best Arabidopsis Sequence Match ( AT5G02500.1 )
(BLAST)

001: MSGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPVNTV FDAKRLIGRR FSDSSVQSDM KLWPFKIQAG
101: PADKPMIYVE YKGEEKEFAA EEISSMVLIK MREIAEAYLG VTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKSKKDIT GNPRALRRLR TSCERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQGAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTTLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YAYNMRNTIQ DEKIGEKLPA ADKKKIEDSI EQAIQWLEGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGEAGGPGAS GMDDDAPPAS GGAGPKIEEV D

Arabidopsis Description

MED37EProbable mediator of RNA polymerase II transcription subunit 37e [Source:UniProtKB/Swiss-Prot;Acc:P22953]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.