Factsheet for GSMUA_Achr8P20830_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24810	Soybean	nucleus	94.6	94.45
GSMUA_Achr10P...	Banana	cytosol	70.22	94.4
KRH29811	Soybean	nucleus	94.44	94.3
GSMUA_Achr7P15160_001	Banana	cytosol	62.19	93.29
Os03t0277300-01	Rice	plastid	89.81	89.13
Zm00001d047799_P002	Maize	cytosol, extracellular, plasma membrane, plastid	89.66	89.11
EER92466	Sorghum	cytosol	89.35	88.8
TraesCS4D01G206600.1	Wheat	cytosol	89.81	88.58
TraesCS4B01G205700.1	Wheat	cytosol, golgi	89.81	88.58
HORVU4Hr1G059260.1	Barley	cytosol	89.81	88.58
GSMUA_Achr6P15270_001	Banana	cytosol	61.88	87.75
TraesCS4A01G098600.1	Wheat	cytosol	89.97	87.14
GSMUA_Achr9P03960_001	Banana	cytosol	67.28	85.32
GSMUA_Achr5P04580_001	Banana	endoplasmic reticulum	61.11	73.2
GSMUA_Achr9P23710_001	Banana	endoplasmic reticulum	58.8	62.46
GSMUA_Achr3P27250_001	Banana	endoplasmic reticulum	57.41	61.9
GSMUA_Achr4P11940_001	Banana	cytosol	63.89	57.34
GSMUA_Achr3P12480_001	Banana	mitochondrion	45.22	47.95
GSMUA_Achr4P19830_001	Banana	mitochondrion	48.3	45.96
GSMUA_Achr6P36350_001	Banana	mitochondrion	37.35	45.75
GSMUA_Achr6P28370_001	Banana	plastid	44.44	44.86
GSMUA_Achr9P07750_001	Banana	plastid	44.14	44.48
GSMUA_Achr5P10770_001	Banana	cytosol	50.31	44.17
GSMUA_Achr6P12370_001	Banana	plastid	44.44	22.04

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40	Gene3D:3.90.640.10
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr8G20830_001
EnsemblPlants:GSMUA_Achr8P20830_001	EnsemblPlants:GSMUA_Achr8T20830_001	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam
InterPro:IPR029047	InterPro:IPR029048	UniProt:M0TS86	PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297
ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF308	SUPFAM:SSF100920	SUPFAM:SSF100934
SUPFAM:SSF53067	UniParc:UPI000295DDA1	SEG:seg	:	:	:

Description

Heat shock cognate 70 kDa protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G20830_001]

Coordinates

chr8:-:25919856..25924456

Molecular Weight (calculated)

70939.3 Da

IEP (calculated)

4.828

GRAVY (calculated)

-0.409

Length

648 amino acids

Sequence
(BLAST)

001: MAGKGDGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDT ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FTDASVQSDI KLWPFKVTSG
101: PGDKPMIAVQ YKGEEKQFSA EEISSMVLMK MKEIAEAYLG SVVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKHKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGVDFY
301: TTITRARFEE LNMDLFRKCM DPVEKCLRDA KMDKSSVDDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKED IEKMVQEAEK YKSEDEEHKK KVEAKNALEN YSYNMRNTIK DDKIASKLAA ADKKKIEDAI DQAIQWLDGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GADMGGGMDD DAPSAGASGA GPKIEEVD

Best Arabidopsis Sequence Match ( AT3G12580.1 )
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD

Arabidopsis Description

MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.