CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 20209511
nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 20209511 doi

MZ Nouri, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba, Tsukuba, Japan.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29811	Soybean	nucleus	98.61	98.61
KRH01631	Soybean	endoplasmic reticulum	94.92	94.92
GSMUA_Achr10P...	Banana	cytosol	70.42	94.81
KRH70484	Soybean	cytosol	81.66	94.64
GSMUA_Achr8P20830_001	Banana	cytosol, plasma membrane	94.45	94.6
Solyc04g011440.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	94.76	94.47
KRH19702	Soybean	endoplasmic reticulum	91.83	94.3
VIT_08s0007g00130.t01	Wine grape	cytosol	94.3	94.3
VIT_06s0004g04470.t01	Wine grape	cytosol	94.61	94.17
PGSC0003DMT400071337	Potato	cytosol	94.14	94.14
KRH67530	Soybean	endoplasmic reticulum, nucleus	94.3	93.72
KRG95806	Soybean	nucleus	93.84	93.12
Zm00001d047799_P002	Maize	cytosol, extracellular, plasma membrane, plastid	91.53	91.1
Os03t0277300-01	Rice	plastid	91.53	90.96
EER92466	Sorghum	cytosol	91.06	90.64
HORVU4Hr1G059260.1	Barley	cytosol	91.53	90.41
TraesCS4D01G206600.1	Wheat	cytosol	91.53	90.41
TraesCS4B01G205700.1	Wheat	cytosol, golgi	91.37	90.26
KRH03029	Soybean	nucleus	88.6	89.15
TraesCS4A01G098600.1	Wheat	cytosol	91.68	88.94
KRH72327	Soybean	endoplasmic reticulum	88.14	87.73
GSMUA_Achr9P03960_001	Banana	cytosol	67.33	85.52
KRH49659	Soybean	endoplasmic reticulum	64.41	66.03
KRH11084	Soybean	endoplasmic reticulum	65.02	65.83
KRH01651	Soybean	cytosol	60.86	65.61
KRH11083	Soybean	cytosol, endoplasmic reticulum	59.17	65.31
KRH01609	Soybean	cytosol	66.72	64.34
KRH01610	Soybean	cytosol, endoplasmic reticulum	66.41	64.04
KRH41370	Soybean	endoplasmic reticulum	64.25	62.52
KRH60086	Soybean	endoplasmic reticulum	64.25	62.43
KRH60091	Soybean	nucleus	64.41	59.63
KRH41372	Soybean	endoplasmic reticulum	63.94	58.62
KRH21163	Soybean	endoplasmic reticulum	39.91	52.97
KRH70355	Soybean	cytosol	65.49	47.65
KRH21710	Soybean	endoplasmic reticulum	48.69	46.88
KRH10640	Soybean	nucleus	48.54	46.74
KRH42039	Soybean	mitochondrion	48.07	46.09
KRH49859	Soybean	endoplasmic reticulum, nucleus	47.92	45.94
KRH26303	Soybean	cytosol, endoplasmic reticulum	18.64	45.32
KRH06058	Soybean	mitochondrion	47.46	44.7
KRH26302	Soybean	plastid	18.95	44.57

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:100816111	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40
Gene3D:3.90.640.10	EMBL:ACUP02007186	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G064000	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam
UniProt:I1LQR4	InterPro:IPR029047	InterPro:IPR029048	EnsemblPlants:KRH24810	ProteinID:KRH24810	ProteinID:KRH24810.1
PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375
PANTHER:PTHR19375:SF323	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	UniParc:UPI00023D0B7D	SEG:seg

Description

hypothetical protein

Coordinates

chr12:-:4707197..4709987

Molecular Weight (calculated)

71091.5 Da

IEP (calculated)

4.836

GRAVY (calculated)

-0.416

Length

649 amino acids

Sequence
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDT ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FSDASVQSDM KLWPFKVIPG
101: PADKPMIVVN YKGDEKQFSA EEISSMVLIK MKEIAEAYLG STIKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKATSSGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNARALRRLR TACERAKRTL SSTAQTTIEI DSLYEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSTVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVEAKNTLEN YAYNMRNTIK DDKIASKLSA DDKKKIEDAI EQAIQWLDGN QLAEADEFED
601: KMKELESICN PIIAKMYQGA GGDAGGAMDE DGPAAGSGSG AGPKIEEVD

Best Arabidopsis Sequence Match ( AT3G12580.1 )
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD

Arabidopsis Description

MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.