CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72327	Soybean	endoplasmic reticulum	97.98	96.93
VIT_11s0037g00510.t01	Wine grape	cytosol	91.94	90.4
KRH24810	Soybean	nucleus	89.15	88.6
KRH29811	Soybean	nucleus	88.84	88.29
KRH01631	Soybean	endoplasmic reticulum	87.6	87.06
KRG95806	Soybean	nucleus	88.22	87.0
PGSC0003DMT400029104	Potato	cytosol	82.79	86.97
KRH67530	Soybean	endoplasmic reticulum, nucleus	87.91	86.83
KRH70484	Soybean	cytosol	75.35	86.79
KRH19702	Soybean	endoplasmic reticulum	84.96	86.71
AT1G16030.1	Thale cress	cytosol	86.67	86.53
Bra026084.1-P	Field mustard	cytosol	86.51	86.24
CDX83960	Canola	cytosol	86.82	86.15
Bra016644.1-P	Field mustard	cytosol	86.51	85.85
CDY33359	Canola	cytosol	68.84	85.71
CDX96825	Canola	cytosol	86.36	85.69
Solyc07g005820.2.1	Tomato	cytosol	86.82	85.63
CDY35063	Canola	cytosol	68.68	85.52
GSMUA_Achr5P04580_001	Banana	endoplasmic reticulum	63.72	75.97
KRH11084	Soybean	endoplasmic reticulum	67.13	67.55
KRH11083	Soybean	cytosol, endoplasmic reticulum	61.4	67.35
KRH49659	Soybean	endoplasmic reticulum	63.1	64.3
KRH01651	Soybean	cytosol	59.69	63.95
KRH01609	Soybean	cytosol	65.58	62.85
KRH60086	Soybean	endoplasmic reticulum	64.19	61.98
KRH41370	Soybean	endoplasmic reticulum	64.03	61.92
KRH01610	Soybean	cytosol, endoplasmic reticulum	64.03	61.37
KRH60091	Soybean	nucleus	64.5	59.34
KRH41372	Soybean	endoplasmic reticulum	63.88	58.19
KRH21163	Soybean	endoplasmic reticulum	40.78	53.78
KRH21710	Soybean	endoplasmic reticulum	48.53	46.44
KRH10640	Soybean	nucleus	48.37	46.29
KRH49859	Soybean	endoplasmic reticulum, nucleus	48.22	45.94
KRH42039	Soybean	mitochondrion	48.22	45.94
KRH70355	Soybean	cytosol	63.41	45.85
KRH26302	Soybean	plastid	19.53	45.65
KRH06058	Soybean	mitochondrion	47.29	44.27
KRH26303	Soybean	cytosol, endoplasmic reticulum	17.67	42.7

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:100782173	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40
Gene3D:3.90.640.10	EMBL:ACUP02010333	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G072400	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam
UniProt:I1MT10	InterPro:IPR029047	InterPro:IPR029048	EnsemblPlants:KRH03029	ProteinID:KRH03029	ProteinID:KRH03029.1
PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375
PANTHER:PTHR19375:SF316	SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	UniParc:UPI0001B63B3B	SEG:seg

Description

hypothetical protein

Coordinates

chr17:-:5661187..5663608

Molecular Weight (calculated)

70869.6 Da

IEP (calculated)

5.015

GRAVY (calculated)

-0.411

Length

645 amino acids

Sequence
(BLAST)

001: MATKEGKAIG IDLGTTYSCV GVWQNDRVEI IPNDQGNRTT PSYVAFTDTE RLIGDAAKNQ VAMNPQNTVF DAKRLIGRRF SDSSVQNDMK LWPFKVVAGP
101: GDKPMIVVNY KGEEKKFSAE EISSMVLVKM REVAEAFLGH AVKNAVVTVP AYFNDSQRQA TKDAGAISGL NVLRIINEPT AAAIAYGLDK KASRKGEQNV
201: LIFDLGGGTF DVSILTIEEG IFEVKATAGD THLGGEDFDN RMVNHFVSEF KRKNKKDISG NARALRRLRT ACERAKRTLS STAQTTIEID SLYEGIDFYA
301: TITRARFEEM NMDLFRKCME PVEKCLRDAK IDKSQVHEVV LVGGSTRIPK VQQLLQDFFN GKELCKSINP DEAVAYGAAV QAAILSGEGD EKVQDLLLLD
401: VTPLSLGLET AGGVMTVLIP RNTTIPTKKE QIFSTYSDNQ PGVLIQVFEG ERARTKDNNL LGKFELTGIP PAPRGVPQIN VCFDIDANGI LNVSAEDKTA
501: GVKNKITITN DKGRLSKEEI EKMVKDAERY KAEDEEVKKK VEAKNSLENY AYNMRNTIKD EKIGGKLSPD EKQKIEKAVE DAIQWLEGNQ MAEVDEFEDK
601: QKELEGICNP IIAKMYQGAA GPGGDVPMGA DMPAAGAGPK IEEVD

Best Arabidopsis Sequence Match ( AT1G16030.1 )
(BLAST)

001: MATKSEKAIG IDLGTTYSCV GVWMNDRVEI IPNDQGNRTT PSYVAFTDTE RLIGDAAKNQ VALNPQNTVF DAKRLIGRKF SDPSVQSDIL HWPFKVVSGP
101: GEKPMIVVSY KNEEKQFSPE EISSMVLVKM KEVAEAFLGR TVKNAVVTVP AYFNDSQRQA TKDAGAISGL NVLRIINEPT AAAIAYGLDK KGTKAGEKNV
201: LIFDLGGGTF DVSLLTIEEG VFEVKATAGD THLGGEDFDN RLVNHFVAEF RRKHKKDIAG NARALRRLRT ACERAKRTLS STAQTTIEID SLHEGIDFYA
301: TISRARFEEM NMDLFRKCMD PVEKVLKDAK LDKSSVHDVV LVGGSTRIPK IQQLLQDFFN GKELCKSINP DEAVAYGAAV QAAILTGEGS EKVQDLLLLD
401: VAPLSLGLET AGGVMTVLIP RNTTVPCKKE QVFSTYADNQ PGVLIQVYEG ERARTRDNNL LGTFELKGIP PAPRGVPQIN VCFDIDANGI LNVSAEDKTA
501: GVKNQITITN DKGRLSKEEI EKMVQDAEKY KAEDEQVKKK VEAKNSLENY AYNMRNTIKD EKLAQKLTQE DKQKIEKAID ETIEWIEGNQ LAEVDEFEYK
601: LKELEGICNP IISKMYQGGA AAGGMPTDGD FSSSGAAGGP KIEEVD

Arabidopsis Description

HSP70-5Hsp70b [Source:UniProtKB/TrEMBL;Acc:A0A178W9N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.