CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P15160_001	Banana	cytosol	63.29	92.59
KRH67530	Soybean	endoplasmic reticulum, nucleus	95.25	92.19
KRH29811	Soybean	nucleus	94.62	92.14
Os11t0703900-01	Rice	extracellular, plasma membrane	94.3	91.83
KRH24810	Soybean	nucleus	94.3	91.83
KRG95806	Soybean	nucleus	94.94	91.74
Solyc09g010630.2.1	Tomato	extracellular	94.15	91.68
PGSC0003DMT400023039	Potato	cytosol, extracellular	93.99	91.53
Zm00001d041550_P005	Maize	cytosol	93.83	91.37
TraesCS4A01G175100.1	Wheat	cytosol	80.38	91.37
EES16191	Sorghum	cytosol	93.51	91.06
KRH01631	Soybean	endoplasmic reticulum	93.35	90.91
Os03t0821100-01	Rice	plasma membrane	93.04	90.6
KRH70484	Soybean	cytosol	80.22	90.54
Zm00001d030725_P003	Maize	plasma membrane	92.88	90.45
TraesCS4D01G140800.1	Wheat	cytosol, nucleus	92.72	90.43
HORVU5Hr1G113180.1	Barley	cytosol	91.77	89.51
TraesCS5A01G479300.1	Wheat	golgi	91.46	89.2
TraesCS5D01G492900.2	Wheat	cytosol	91.46	89.2
TraesCS5B01G492500.1	Wheat	cytosol	91.3	89.04
TraesCS4B01G142400.1	Wheat	cytosol	92.56	87.44
KRH03029	Soybean	nucleus	86.71	84.96
KRH72327	Soybean	endoplasmic reticulum	86.08	83.44
KRH01651	Soybean	cytosol	60.44	63.46
KRH49659	Soybean	endoplasmic reticulum	63.13	63.03
KRH11084	Soybean	endoplasmic reticulum	63.92	63.03
KRH11083	Soybean	cytosol, endoplasmic reticulum	57.59	61.9
KRH01609	Soybean	cytosol	65.35	61.37
KRH01610	Soybean	cytosol, endoplasmic reticulum	65.35	61.37
KRH60086	Soybean	endoplasmic reticulum	63.45	60.03
KRH41370	Soybean	endoplasmic reticulum	63.29	59.97
KRH60091	Soybean	nucleus	63.61	57.35
KRH41372	Soybean	endoplasmic reticulum	63.29	56.5
KRH21163	Soybean	endoplasmic reticulum	38.29	49.49
KRH70355	Soybean	cytosol	64.87	45.96
KRH21710	Soybean	endoplasmic reticulum	48.58	45.55
KRH10640	Soybean	nucleus	48.58	45.55
KRH26303	Soybean	cytosol, endoplasmic reticulum	19.15	45.32
KRH42039	Soybean	mitochondrion	47.94	44.76
KRH49859	Soybean	endoplasmic reticulum, nucleus	47.78	44.61
KRH26302	Soybean	plastid	19.46	44.57
KRH06058	Soybean	mitochondrion	47.94	43.98

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40	Gene3D:3.90.640.10
EMBL:ACUP02008197	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G130900	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047
InterPro:IPR029048	UniProt:K7LZH1	EnsemblPlants:KRH19702	ProteinID:KRH19702	ProteinID:KRH19702.1	PFAM:PF00012
PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	PANTHER:PTHR19375	PANTHER:PTHR19375:SF308	SUPFAM:SSF100920
SUPFAM:SSF100934	SUPFAM:SSF53067	UniParc:UPI00023CEBE1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:-:24371957..24374600

Molecular Weight (calculated)

69273.4 Da

IEP (calculated)

4.867

GRAVY (calculated)

-0.428

Length

632 amino acids

Sequence
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVGFTDT ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FSDASVQSDI KLWPFKVLSG
101: PAEKPMIQVS YKGEDKQFAA EEISSMVLMK MREIAEAYLG SSIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKRTVHDV VLVGGSTRIP KSINPDEAVA YGAAVQAAIL SGEGNEKVQD LLLLDVTPLS LGLETAGGVM
401: TVLIPRNTTI PTKKEQVFST YSDNQPGVLI QVYEGERTRT RDNNLLGKFE LSGIPPAPRG VPQITVCFDI DANGILNVSA EDKTTGQKNK ITITNDKGRL
501: SKEEIEKMVQ EAEKYKSEDE EHKKKVEAKN ALENYSYNMR NTIKDEKIGG KLDPADKKKI EDAIEQAIQW LDSNQLGEAD EFEDKMKELE SICNPIIAKM
601: YQGGAGPDVG GAMDDDVPAA GSGAGPKIEE VD

Best Arabidopsis Sequence Match ( AT3G09440.1 )
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FTDSSVQSDI KLWPFTLKSG
101: PAEKPMIVVN YKGEDKEFSA EEISSMILIK MREIAEAYLG TTIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVMRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIS GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFDGIDFY
301: APITRARFEE LNIDLFRKCM EPVEKCLRDA KMDKNSIDDV VLVGGSTRIP KVQQLLVDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI QRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKDE IEKMVQEAEK YKSEDEEHKK KVDAKNALEN YAYNMRNTIR DEKIGEKLAG DDKKKIEDSI EAAIEWLEAN QLAECDEFED
601: KMKELESICN PIIAKMYQGG EAGGPAAGGM DEDVPPSAGG AGPKIEEVD

Arabidopsis Description

HSP70-3Heat shock protein 70 (Hsp 70) family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VI76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.