CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041550_P005	Maize	cytosol	99.23	99.23
Zm00001d030725_P003	Maize	plasma membrane	99.08	99.08
Os11t0703900-01	Rice	extracellular, plasma membrane	95.84	95.84
TraesCS4D01G140800.1	Wheat	cytosol, nucleus	94.76	94.91
TraesCS4A01G175100.1	Wheat	cytosol	81.2	94.78
VIT_06s0004g04510.t01	Wine grape	cytosol, extracellular	94.3	94.44
EES19649	Sorghum	cytosol	93.99	93.99
Solyc09g010630.2.1	Tomato	extracellular	93.68	93.68
PGSC0003DMT400023039	Potato	cytosol, extracellular	93.53	93.53
KRH19702	Soybean	endoplasmic reticulum	91.06	93.51
EES01731	Sorghum	cytosol	92.91	93.06
VIT_13s0019g01430.t01	Wine grape	cytosol	92.6	92.46
KXG26133	Sorghum	cytosol	87.67	92.37
KRH67530	Soybean	endoplasmic reticulum, nucleus	92.91	92.34
KRG95806	Soybean	nucleus	92.76	92.05
GSMUA_Achr7P15160_001	Banana	cytosol	61.17	91.9
TraesCS4B01G142400.1	Wheat	cytosol	94.61	91.78
EER95095	Sorghum	cytosol	91.68	91.68
EER92466	Sorghum	cytosol	88.44	88.04
EER95094	Sorghum	cytosol	59.32	69.0
KXG39675	Sorghum	cytosol	55.16	66.67
EER95091	Sorghum	cytosol	57.32	65.72
KXG39678	Sorghum	cytosol	56.24	65.65
OQU92816	Sorghum	cytosol	43.3	64.75
EER92471	Sorghum	cytosol	55.78	63.29
KXG39677	Sorghum	cytosol	53.47	63.09
EER95090	Sorghum	cytosol	53.77	61.12
OQU92815	Sorghum	cytosol	35.59	60.63
KXG29291	Sorghum	plasma membrane	61.48	58.85
EER93587	Sorghum	endoplasmic reticulum	58.55	56.21
EES01866	Sorghum	endoplasmic reticulum	57.32	55.77
KXG37805	Sorghum	plastid	47.0	44.72
EER91365	Sorghum	mitochondrion	46.69	44.69
EER99104	Sorghum	mitochondrion	45.76	43.81
EES15917	Sorghum	plastid	46.53	43.02

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40	Gene3D:3.90.640.10
EntrezGene:8074234	UniProt:C5YPZ1	ncoils:Coil	EnsemblPlants:EES16191	ProteinID:EES16191	ProteinID:EES16191.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf
InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	PFAM:PF00012	PRINTS:PR00301
ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF327	EnsemblPlantsGene:SORBI_3008G136000
SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	unigene:Sbi.91	UniParc:UPI0001A88598	RefSeq:XP_002442353.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:56470318..56474560

Molecular Weight (calculated)

71038.5 Da

IEP (calculated)

4.874

GRAVY (calculated)

-0.400

Length

649 amino acids

Sequence
(BLAST)

001: MAGKGDGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPINTV FDAKRLIGRR FSDASVQSDI KLWPFKVISG
101: PGEKPMIVVQ HKGEEKQFAA EEISSMVLIK MREIAEAYLG STIKNAVVTV PAYFNDSQRQ ATKDAGVIAG LNVLRIINEP TAAAIAYGLD KKATSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGIDFY
301: STITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP RVQQLLQDFF NGKELCKNIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQVFSTYSDN QPGVLIQVYE GERTRTRDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQDAEK YKSEDEEHKK KVEAKNSLEN YAYNMRNTIK DEKIASKLAG DDKKKIEDAI DAAISWLDAN QLAEADEFED
601: KMKELESLCN PIIAKMYQGA GADMGGAGGM DEDAPAGSGG PGPKIEEVD

Best Arabidopsis Sequence Match ( AT3G12580.1 )
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD

Arabidopsis Description

MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.