CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95095
EES01731
EES11741
EES19649
KXG26133
KXG30344
KXG34268

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	EER95095	AT3G12580.1	18065690
AT4G11260.1	EES01731	AT3G12580.1	18065690
AT4G11260.1	EES19649	AT3G12580.1	18065690
AT4G11260.1	KXG26133	AT3G12580.1	18065690
AT4G11260.1	KXG34268	AT4G37460.1	21798944
AT4G11260.1	KXG30344	AT5G51700.1	11847307
AT4G11260.1	KXG30344	AT5G51700.1	18065690
AT4G11260.1	EES11741	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044172_P002	Maize	extracellular	94.78	95.57
Zm00001d011401_P001	Maize	extracellular	93.96	94.74
Os01t0624500-01	Rice	cytosol, nucleus	29.4	90.68
HORVU3Hr1G055920.7	Barley	cytosol	83.79	81.77
TraesCS3B01G255300.1	Wheat	cytosol	78.02	75.33
TraesCS3D01G227500.3	Wheat	golgi	85.44	73.52
VIT_16s0050g01510.t01	Wine grape	cytosol	68.13	68.7
GSMUA_Achr7P10850_001	Banana	cytosol	68.96	68.39
PGSC0003DMT400053839	Potato	cytosol, mitochondrion	67.03	65.95
Solyc03g007670.2.1	Tomato	cytosol, extracellular	66.76	65.68
GSMUA_Achr4P15560_001	Banana	cytosol	64.56	63.69
KRH08815	Soybean	nucleus	62.36	63.23
KRH38332	Soybean	cytosol, nucleus	62.36	63.23
KRH35228	Soybean	cytosol	61.81	63.03
Bra019295.1-P	Field mustard	cytosol	59.34	62.97
CDY28656	Canola	cytosol	12.09	62.86
CDY43481	Canola	cytosol	12.09	62.86
CDY10946	Canola	cytosol	59.34	62.79
CDX94203	Canola	cytosol	59.34	62.79
GSMUA_Achr7P14290_001	Banana	cytosol	63.74	62.7
PGSC0003DMT400074364	Potato	cytosol	63.46	62.26
AT4G23570.3	Thale cress	cytosol	59.62	61.82
Bra000741.1-P	Field mustard	cytosol	60.44	61.45
Bra035239.1-P	Field mustard	cytosol	59.89	61.41
CDY05137	Canola	cytosol	60.44	61.28
CDX90794	Canola	cytosol	60.44	61.28
CDX86798	Canola	cytosol	59.89	61.06
CDY13243	Canola	cytosol	59.07	60.39
CDY10892	Canola	endoplasmic reticulum, golgi	31.32	60.32
KRH77588	Soybean	cytosol	59.62	60.11
AT4G11260.1	Thale cress	cytosol	59.07	60.06
EES00345	Sorghum	cytosol	58.52	59.83
CDY44117	Canola	cytosol	58.52	59.66
Bra013710.1-P	Field mustard	cytosol	52.75	59.63
Solyc06g036420.1.1	Tomato	cytosol	48.35	59.46
Solyc06g036410.1.1	Tomato	cytosol	10.71	59.09
CDY10894	Canola	cytosol	57.42	58.87
KRH27885	Soybean	cytosol	58.79	57.22
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	31.87	52.73
Bra019498.1-P	Field mustard	cytosol, plastid	29.12	47.96
VIT_02s0025g00450.t01	Wine grape	cytosol	42.86	46.15
KRG94038	Soybean	cytosol, mitochondrion, nucleus	9.07	45.21
CDY63435	Canola	cytosol, mitochondrion, nucleus	33.24	41.16
CDY71639	Canola	cytosol, plastid	12.36	37.82
VIT_12s0035g01560.t01	Wine grape	cytosol, plasma membrane, vacuole	20.05	28.85

Protein Annotations

Gene3D:1.25.40.10	MapMan:19.1.6.3	Gene3D:2.60.40.790	EntrezGene:8084854	UniProt:C5XEC3	InterPro:CS_dom
ncoils:Coil	EnsemblPlants:EES01101	ProteinID:EES01101	ProteinID:EES01101.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR007699	InterPro:IPR008978	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	PFAM:PF04969	PFAM:PF05002	PFAM:PF13181	PFAM:PF13432
PFscan:PS50005	PFscan:PS50293	PFscan:PS51048	PFscan:PS51203	PANTHER:PTHR22904	PANTHER:PTHR22904:SF496
InterPro:SGS_dom	SMART:SM00028	EnsemblPlantsGene:SORBI_3003G226500	SUPFAM:SSF48452	SUPFAM:SSF49764	unigene:Sbi.10604
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0001A8438B	RefSeq:XP_002455981.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:56287247..56292939

Molecular Weight (calculated)

40443.4 Da

IEP (calculated)

4.721

GRAVY (calculated)

-0.617

Length

364 amino acids

Sequence
(BLAST)

001: MAASDLESKA KEAFVDDDFE LAAELYTQAI DAGPATAELY ADRAQAHIKL GNYTEAVADA NKAIELDPTM HKAYYRKGAA CIKLEEYQTA KAALELGSSY
101: ASGDSRFTRL LKECEERIAE ESSQAPAKNV EPPVAAAAAT VEDKEDVANM ENTPPVVEPP SKPKYRHDYY NSATEVVLTI FAKGVPADSV VIDFGEQMLS
201: VSIEVPGEEP YHFQPRLFAK IIPEKCKYQV LSTKVEIRLA KAEQVTWTTL DYSGRPKAVP QKISTPAETA PRPSYPSSKA KKDWDKLEAE VKKEEKEEKL
301: DGDAALNKFF RDIYKDADED MRRAMMKSFV ESNGTVLSTN WKDVGSKKVE GSPPDGMELK KWEY

Best Arabidopsis Sequence Match ( AT4G11260.1 )
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

Arabidopsis Description

SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.