Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400024594 | |
| PGSC0003DMT400070430 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G11260.1 | PGSC0003DMT400070430 | AT5G51700.1 | 11847307 |
| AT4G11260.1 | PGSC0003DMT400070430 | AT5G51700.1 | 18065690 |
| AT4G11260.1 | PGSC0003DMT400024594 | AT5G52640.1 | 18065690 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g036420.1.1 | Tomato | cytosol | 72.24 | 90.54 |
| PGSC0003DMT400053839 | Potato | cytosol, mitochondrion | 73.05 | 73.24 |
| Os01t0624500-01 | Rice | cytosol, nucleus | 22.64 | 71.19 |
| VIT_16s0050g01510.t01 | Wine grape | cytosol | 68.19 | 70.08 |
| KRH38332 | Soybean | cytosol, nucleus | 66.04 | 68.25 |
| KRH08815 | Soybean | nucleus | 65.77 | 67.97 |
| KRH35228 | Soybean | cytosol | 62.8 | 65.27 |
| CDY10946 | Canola | cytosol | 60.38 | 65.12 |
| Bra019295.1-P | Field mustard | cytosol | 60.11 | 65.01 |
| Zm00001d044172_P002 | Maize | extracellular | 62.26 | 63.99 |
| CDX94203 | Canola | cytosol | 59.3 | 63.95 |
| AT4G23570.3 | Thale cress | cytosol | 60.38 | 63.82 |
| EES01101 | Sorghum | cytosol | 62.26 | 63.46 |
| Bra000741.1-P | Field mustard | cytosol | 60.92 | 63.13 |
| Bra035239.1-P | Field mustard | cytosol | 60.38 | 63.1 |
| CDX86798 | Canola | cytosol | 60.38 | 62.75 |
| Zm00001d011401_P001 | Maize | extracellular | 60.92 | 62.6 |
| AT4G11260.1 | Thale cress | cytosol | 60.38 | 62.57 |
| CDY05137 | Canola | cytosol | 60.11 | 62.12 |
| CDY13243 | Canola | cytosol | 59.57 | 62.08 |
| CDX90794 | Canola | cytosol | 59.84 | 61.84 |
| HORVU3Hr1G055920.7 | Barley | cytosol | 61.73 | 61.39 |
| GSMUA_Achr4P15560_001 | Banana | cytosol | 60.92 | 61.25 |
| GSMUA_Achr7P10850_001 | Banana | cytosol | 59.57 | 60.22 |
| GSMUA_Achr7P14290_001 | Banana | cytosol | 59.57 | 59.73 |
| Bra013710.1-P | Field mustard | cytosol | 51.75 | 59.63 |
| CDY10894 | Canola | cytosol | 56.87 | 59.44 |
| CDY44117 | Canola | cytosol | 57.14 | 59.38 |
| CDY43481 | Canola | cytosol | 10.78 | 57.14 |
| CDY28656 | Canola | cytosol | 10.78 | 57.14 |
| TraesCS3B01G255300.1 | Wheat | cytosol | 57.41 | 56.5 |
| CDY10892 | Canola | endoplasmic reticulum, golgi | 28.3 | 55.56 |
| TraesCS3D01G227500.3 | Wheat | golgi | 61.46 | 53.9 |
| CDY44118 | Canola | endoplasmic reticulum, plastid, vacuole | 30.46 | 51.36 |
| Bra019498.1-P | Field mustard | cytosol, plastid | 29.38 | 49.32 |
| CDY63435 | Canola | cytosol, mitochondrion, nucleus | 33.42 | 42.18 |
| KRG94038 | Soybean | cytosol, mitochondrion, nucleus | 8.09 | 41.1 |
| CDY71639 | Canola | cytosol, plastid | 12.13 | 37.82 |
| VIT_12s0035g01560.t01 | Wine grape | cytosol, plasma membrane, vacuole | 18.6 | 27.27 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:102579484 | MapMan:19.1.6.3 | Gene3D:2.60.40.790 | InterPro:CS_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:HSP20-like_chaperone | InterPro:IPR007052 | InterPro:IPR007699 | InterPro:IPR008978 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | UniProt:M1CTK8 | PFAM:PF04969 | PFAM:PF05002 |
| PFAM:PF13181 | EnsemblPlantsGene:PGSC0003DMG400028904 | PGSC:PGSC0003DMG400028904 | EnsemblPlants:PGSC0003DMT400074364 | PFscan:PS50005 | PFscan:PS50293 |
| PFscan:PS51048 | PFscan:PS51203 | PANTHER:PTHR22904 | PANTHER:PTHR22904:SF496 | InterPro:SGS_dom | SMART:SM00028 |
| SUPFAM:SSF48452 | SUPFAM:SSF49764 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI000296D316 |
| RefSeq:XP_006360190.1 | RefSeq:XP_015170215.1 | SEG:seg | : | : | : |
Description
SGT1 [Source:PGSC_GENE;Acc:PGSC0003DMG400028904]
Coordinates
chr6:+:37968211..37972857
Molecular Weight (calculated)
41421.0 Da
IEP (calculated)
5.068
GRAVY (calculated)
-0.509
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDLVTKAK EAFIDDHFEV AVDLYSQAIA ITSNNAELFA DRAQANIKLR NFTEAVADAN KAIELDPSMA KACMRKGLAC MKLEEYQTAK ATLETGASLA
101: PGESRFTRLI KECDEHIEKE AEKLPKHATV ETTESVVPPT ESKSLDNVAA VPKETQLAFN LSYEGTPAVK PKYRHEFYQK PEEAVVTIFA KGIPAENVSV
201: DFGEQILSVS IDIPGEAAYS FQPRLFGKII PQKCKYEVMS TKIEIRLAKA ESIHWTCLKY TGETAVVQRP SVSSDSHKPS YPSSNMICKD WDKLEVQMKK
301: EEKEEKLEGD AALNKFFRDI YKDGDDDARR AMMKSFVESN GTVLSTNWNE VGTKKVEGSP PDGMELKQWE H
101: PGESRFTRLI KECDEHIEKE AEKLPKHATV ETTESVVPPT ESKSLDNVAA VPKETQLAFN LSYEGTPAVK PKYRHEFYQK PEEAVVTIFA KGIPAENVSV
201: DFGEQILSVS IDIPGEAAYS FQPRLFGKII PQKCKYEVMS TKIEIRLAKA ESIHWTCLKY TGETAVVQRP SVSSDSHKPS YPSSNMICKD WDKLEVQMKK
301: EEKEEKLEGD AALNKFFRDI YKDGDDDARR AMMKSFVESN GTVLSTNWNE VGTKKVEGSP PDGMELKQWE H
001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY
Arabidopsis Description
SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.